Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00101 ATGGAATCTTTTGTTGTTGATGTTGTGCCAGTGCCAACTGCAAAACGGCGCCGATCAACGGGATTTTCTCCTGATCCCGGTGGAGACAAAAGACTGAAAATTTCAAGTTATAGCCTGCCGTACTCAGCACATGAAAAGACTTCGAATGTTGTTGATTACAACAATCCATTTGCAATATCTGATGTTCTGGATAGTTTAGAGAGCGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGACCTTATAGCCCAAAAAATGCAAATATTGGGCCCTTACTTTGTTAAATATCCCATTCTGGTGGATCAATGGGTGGAAGCGGTAAAGAAACATCATGAAGAAACTCCTAAGTTGGAAAATCAACTAGTTACTGTTCCGATGCATCAAAATGTCATAGATCTTGAGGAGAAACACACCAGAAAGGATGTCCCTGCGATGCGAGATCAAATTGTGATTATTGATTCGGATGATGAAGATTGTGGAGCTGAAAAATCTATGATCCCATTTCAGGAAGTTGTGTTGCCGAAACTAGTTGCACCGTCCCCTGCATTGAAGATAACTGGGTATCTACCTGTCATTCCTTATCCGGGAGAAAGAGATCTAATAAGTGAGACAAGTATGGAGGATAGACCTAACAGCACTCAGAACAATAAAGGCTTTTATGTTGGTGTACAGGAAGAGGAAGAAGATGAGCTTGATACTGAAGATGACGGTCTAGGAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTTCTGTTGATCCTCACTCAGATGAAGAAGAAGAAGAAGATGACGATGATGATGATGATTGTGATCATTCTTTTGTCTTAAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTAATTGGCCGAGGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGAACTTATGCATCTGATTCATGGAATACCAAGAAAACAGATGTATTTGGAGTTAATGTTGTTAAAGATGATCTCATAGTTACTGAAATCCCAGCGCACCCTAGACACATGAAACAGATGAAGCCCCATCAAGTTGAAGGATTCAATTTTCTTGTTAGAAATCTTGCAGGTGACAATCCTGGTGGCTGCATCTTAGCCCATGCTCCTGGATCTGGGAAAACATTCATGATAATCAGTTTTATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGGACATACCTCTATATGACTTCTACACAGTGAAGGCAGACAGTAGAAGTCAACAACTGGAAGTGCTGAATCAATGGGTGAAGAAGAAGAGTATTCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGAACGATACATCATTATCTTGCCAAAATATTTTACTGAAAATTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTACAGTCTCTTGCAAAAGTTGAGACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAAGGAGGTGTTTAACATTCTAGATCTTGTTCGGCCAAAATTTTTGAAGATGGAAACATCAAAACCTATTGTGAGGCGCATCCAAAGTAGAGTTCATGTACCAGGGATAAAAGGATTCTCTAATTTAGTTGAAAACACTTTGCAGAAGGACACTGATTTTAAAACGAAAATAGCTGTTATACAAGATTTGCGCGAGATGACAAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTGGATTTTACAGTAATGCTCACTCTTAGCCCTAGACAGAAGTCTGAAGTAGCAAAAATAAAAAAGCAATCTAAAAGAAAGTTCAAGATATCTTCTGTAGGAAGTGCCGTCTATCTGCATCCTAGACTGAAACCACTAGCAGAAAATTGTGGTGAAAATTCTATATCTGATCATGTAGTGGATGATTTGGTAGATAAACTGGATATCAGAGATGGTGTGAAGTCAAAATTTTATTACAACATGCTAAATCTGTGTGAATCAGCAGGGGAAAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCCTTGAAATATTTAGAAAGGTTGACTATTAACTGGAAAGGTTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGAATCAAGTTCTGAGCACCGAGAATGGTCCATGGAAAAATTCAACAATTCTCGTGAAGCCAAAGTCTTCTTTGGCTCAATTAAGGCTTGTGGTGAGGGCATATCACTGGTTGGGGCCTCTCGCATAATTATCTTGGACGTTCATCTTAATCCATCAGTTACACGTCAAGCTATAGGTCGTGCATTCAGACCTGGCCAGAAGAAGAAGGTGTTTGTGTATCGTTTAGTATCTGCTGATTCTCCAGAAGAGGAAGATCACCATGTTTGTTTCAAGAAAGAGTTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGTGATGAATTTCTTGAAAGTCCTCTGCTAGGGGAGAATGTAAAAGCTTTATATAGAAGGTGA 2655 0.3906 MESFVVDVVPVPTAKRRRSTGFSPDPGGDKRLKISSYSLPYSAHEKTSNVVDYNNPFAISDVLDSLESGKFGSVTKDIEDLIAQKMQILGPYFVKYPILVDQWVEAVKKHHEETPKLENQLVTVPMHQNVIDLEEKHTRKDVPAMRDQIVIIDSDDEDCGAEKSMIPFQEVVLPKLVAPSPALKITGYLPVIPYPGERDLISETSMEDRPNSTQNNKGFYVGVQEEEEDELDTEDDGLGDIWKEMSMAIECSKDVSVDPHSDEEEEEDDDDDDDCDHSFVLKDDLGYVCRVCGVIGRGIETIFEFQYKVKRSTRTYASDSWNTKKTDVFGVNVVKDDLIVTEIPAHPRHMKQMKPHQVEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRSQQLEVLNQWVKKKSILFLGYKQFSSIVCDNGNDTSLSCQNILLKIPSILILDEGHNPRNENTDMVQSLAKVETPRKVVLSGTLYQNHVKEVFNILDLVRPKFLKMETSKPIVRRIQSRVHVPGIKGFSNLVENTLQKDTDFKTKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVMLTLSPRQKSEVAKIKKQSKRKFKISSVGSAVYLHPRLKPLAENCGENSISDHVVDDLVDKLDIRDGVKSKFYYNMLNLCESAGEKLLVFSQYLLPLKYLERLTINWKGWSLGREIFVISGESSSEHREWSMEKFNNSREAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVSADSPEEEDHHVCFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDEFLESPLLGENVKALYRR 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00101 884 Gene3D - 615 866 IPR027417 -
Viun11g00101 884 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 214 883 IPR044567 GO:0080188
Viun11g00101 884 MobiDBLite consensus disorder prediction 260 275 - -
Viun11g00101 884 Pfam Helicase conserved C-terminal domain 699 807 IPR001650 -
Viun11g00101 884 Gene3D - 322 566 IPR038718 -
Viun11g00101 884 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 367 545 IPR014001 -
Viun11g00101 884 SMART ultradead3 349 558 IPR014001 -
Viun11g00101 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 560 IPR027417 -
Viun11g00101 884 Pfam SNF2-related domain 373 635 IPR000330 GO:0005524|GO:0140658
Viun11g00101 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 846 IPR027417 -
Viun11g00101 884 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 860 IPR001650 -
Viun11g00101 884 CDD SF2_C_SNF 680 819 - -
Viun11g00101 884 MobiDBLite consensus disorder prediction 253 275 - -
Viun11g00101 884 SMART helicmild6 723 808 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00101 Viun-Chr11 643410 651122 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun11g00101 SNF2_N 6.1e-19 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g00101 11 643410 651122 Viun11g00101 11 643410 651122 ECH