Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g00085 ATGAAAACGCTAACAGTTAACACCGAAGATTCTTTTTCCAGTCTGCTAGAGCTTGCCTCTAACAACGATATTGAAGGTTTTAAGGTTCTTTTAGAGAAGGATCCTTCTGCGATCAACGAGGTTGGATTCTGGTATGGACGTCAAAACGGATCGAAGCAAATTGTTCTTGAGCATCGCACTCCTTTGATGGTTGCTGCTACTTACGGTAGCAATGATGTTCTCAAGCTTATTCTGATGTGCCCTGAGGCTGATGTGAATTTCGCTTGTGGAGCTAATAAAACTACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCTGCCAATGCTGTTGAAACTGTGAAGATGCTTTTATCCGCAGGTGCTGATGCGAATTGCATGGATGCCTATGGAAATCGCCCGGTAGATGTGATTGTTGTCCCTCCTAAGCTGCAAGAAATGAAACCTGTGCTTGAGGAGCTTTTATCAGACAGTGCTTCGGATGGGTCTATTGGTGGGTCCATTGGTGAATTCTCTGTTCCTGTGTCTGTTAATTCATCCAGCCCTGGTTCCCCCAATAATGGTTTACCATACTCTCCGTCAGAATCGCCACCATCTCCGGTGGTAGCAAAGTTTGCTGAAGCAGCTATTGGGTCTTTGTCAGAGAAGAAGGAGTATCCCATAGATCCATCTCTGCCTGATATAAAGAACAGCATATACGCCACCGACGAGTTTCGGATGTTTTCCTTCAAGGTTAGGCCTTGTTCCCGGGCCTACTCTCATGATTGGACGGAGTGCCCATTTGTTCACCCCGGAGAGAACGCAAGGAGGAGAGACCCTAGGAAGTTTCATTACAGCTGTGTGCCGTGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGAGGAGACATGTGTGAATATGCTCATGGGGTGTTTGAGTGCTGGCTTCACCCGGCTCAGTATCGGACACGGCTTTGCAAAGATGGCACTAGTTGCAATCGTAGGGTGTGTTTTTTTGCTCACACAGCAGAGGAGCTGCGTCCACTGTATGTGTCCACTGGATCTGCTGTTCCTTCGCCACGATCATCGGCCTCGGCTCCTAATGTCATGGACATGGCTGCTGCGATGAGCCTTTTACCGGGTTCGCCGTCGTCGGTCTCTTCCATGTCGCCATCTCACTTTGGGCAACCGATGTCCCCATCTGCTAATGGCATGTCACTTTCCTCTGGTGCTTGGGCACAGCCAAACGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGCCGATTGAGGTCTTCCCTTAGTGCACGAGACATTCCACCAGAAGACTTGAATGGAATGCTTGATCTTGATGGCCATCAGCACCCTTTGAATGACTTGAGCTGTTACTTACAGCCTCGCCCCGGTGCTGGTTCTGTGAGTCGATCTGGTCGGTCCAAGACCCTAACTCCAGCAAATCTGGAAGAGTTATTTTCTGCTGAAATTTCATCGTCTCCCCGTTATTCGGATCCAGCAGCGGCATCTGTGTTTTCCCCAACCCACAAATCAGCTGTTCTCAATCAGTTTCAACAGATACAGAGCATGTTATCACCAATTAATACTAATTTGCTTTCTCCTAAGAGTGTTGACCATCCTCTTTTACAGGCCTCCTTTGGTGTCTCTCCGTCTGGAAGGATGTCACCAAGAAGTGTGGAACCAATCTCACCTATGAGCGCACGCATGTCTGCGTTTGCTCAGCGTGAGAAACAGCAGCAGCAGCAGCAGCTACAGCTGCGAAATGTCAGTTCAAGGGACCTTGGTGCCAACAGTCCTGCCTCAATTGTTGGCTCTCCTGTAAACGCTTGGTCCAAGTGGGGATCTCCTAATGGAAAAGCTGATTGGTCAGTAAATGGTGACGAGCTTGGTAATCAGATGCGAAGGTCATCCTCATTCGAGCTTAAGCATAATGGCGAAGAGCCTGATCTATCATGGGTCCAGTCTCTGGTGAGGGAATCCCCACCTGAGATGATGAAAGAGAAGTTTGCTTCTCCTCTGCCCACAGCGCCATCAGCGGATGGACCAAATTCTAATTCCCAAATTGAATCCATTGATCATTCCGTTTTAGGAGCCTGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG 2124 0.4863 MKTLTVNTEDSFSSLLELASNNDIEGFKVLLEKDPSAINEVGFWYGRQNGSKQIVLEHRTPLMVAATYGSNDVLKLILMCPEADVNFACGANKTTALHCAASGGSANAVETVKMLLSAGADANCMDAYGNRPVDVIVVPPKLQEMKPVLEELLSDSASDGSIGGSIGEFSVPVSVNSSSPGSPNNGLPYSPSESPPSPVVAKFAEAAIGSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSSVSSMSPSHFGQPMSPSANGMSLSSGAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNGMLDLDGHQHPLNDLSCYLQPRPGAGSVSRSGRSKTLTPANLEELFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQIQSMLSPINTNLLSPKSVDHPLLQASFGVSPSGRMSPRSVEPISPMSARMSAFAQREKQQQQQQLQLRNVSSRDLGANSPASIVGSPVNAWSKWGSPNGKADWSVNGDELGNQMRRSSSFELKHNGEEPDLSWVQSLVRESPPEMMKEKFASPLPTAPSADGPNSNSQIESIDHSVLGAWLEQMQLDQLVV 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g00085 707 MobiDBLite consensus disorder prediction 377 397 - -
Viun11g00085 707 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Viun11g00085 707 MobiDBLite consensus disorder prediction 174 188 - -
Viun11g00085 707 Gene3D - 275 338 - -
Viun11g00085 707 SUPERFAMILY Ankyrin repeat 6 138 IPR036770 -
Viun11g00085 707 Gene3D - 3 156 IPR036770 -
Viun11g00085 707 ProSiteProfiles Zinc finger C3H1-type profile. 280 302 IPR000571 GO:0046872
Viun11g00085 707 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Viun11g00085 707 MobiDBLite consensus disorder prediction 174 194 - -
Viun11g00085 707 FunFam Zinc finger CCCH domain-containing protein 66 233 301 - -
Viun11g00085 707 SMART c3hfinal6 275 301 IPR000571 GO:0046872
Viun11g00085 707 SMART c3hfinal6 310 333 IPR000571 GO:0046872
Viun11g00085 707 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Viun11g00085 707 PANTHER UNKEMPT FAMILY MEMBER 17 657 IPR045234 -
Viun11g00085 707 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 300 IPR000571 GO:0046872
Viun11g00085 707 SMART ANK_2a 57 87 IPR002110 GO:0005515
Viun11g00085 707 SMART ANK_2a 10 40 IPR002110 GO:0005515
Viun11g00085 707 SMART ANK_2a 92 124 IPR002110 GO:0005515
Viun11g00085 707 MobiDBLite consensus disorder prediction 658 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g00085 Viun-Chr11 523773 527375 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun11g00085 Ank_2 5.4e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00354 1 2492961 2498398 Viun11g00085 11 523773 527375 ECH
Viun11g00085 11 523773 527375 Viun11g00085 11 523773 527375 ECH
Viun11g00085 11 523773 527375 Viun1g00354 1 2492961 2498398 PCT