Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g02559 ATGCAAGATCCGACAGCATTCCAAGGTTTGAAGCATCCTCAGTTTCCGGAACAAGAACAACTGAAATGCCCGCGTTGTGACTCCTCGAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCGCGCCACTTTTGCAAGAACTGCAGAAGGTACTGGACAAAGGGTGGTGCTTTGAGAAACATCCCTGTCGGGGGTGGAAGCAGAAAGAGCACAAAACGTTCATCAGCCTCGAAACGCTCGTCTGCGCCGGCTTCCTCTGCGGTTTCTGAGGCTGACCCGACCCGGATTTGCACCAACCCGGTTCAGCAAGACCCTCGGGGGCTCAACATTGGTGGCACCTTCAGTTCCCTGTTGGCTTCGTCTGGCCACTTTGGAACCCTCTTGGAGGGTCTGAATCCAACTGGGTCGGGTCTCAAAATGGGTGAATTTGTGGAGGGTGTGAGTTCTGACCCGGATTCGGGTTCAAACCCGGGTTTGCAGCTTCAGAGTAATGGGAGTTCAGAGGGTTTTCTGGGTATGCAGAATGGGGAATCATCAACCTGTTGGAATGGTGCTCATGGCTGGTCTGATCTTGCAATATACACACCTCGCCCAAGTTTTCAATAG 615 0.522 MQDPTAFQGLKHPQFPEQEQLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSTKRSSASKRSSAPASSAVSEADPTRICTNPVQQDPRGLNIGGTFSSLLASSGHFGTLLEGLNPTGSGLKMGEFVEGVSSDPDSGSNPGLQLQSNGSSEGFLGMQNGESSTCWNGAHGWSDLAIYTPRPSFQ 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g02559 204 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Viun10g02559 204 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 148 IPR045174 GO:0003700|GO:0006355
Viun10g02559 204 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Viun10g02559 204 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Viun10g02559 204 MobiDBLite consensus disorder prediction 62 111 - -
Viun10g02559 204 MobiDBLite consensus disorder prediction 152 179 - -
Viun10g02559 204 MobiDBLite consensus disorder prediction 146 179 - -
Viun10g02559 204 MobiDBLite consensus disorder prediction 70 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g02559 Viun-Chr10 39424901 39426795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g02559 1 131 C2C2-Dof Transcription Factor Family AT1G51700 51.235 4.50e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun10g02559 zf-Dof 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g02559 - - gmx:100790822 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g02559 10 39424901 39426795 Viun10g02559 10 39424901 39426795 ECH
Viun5g03812 5 46701928 46703584 Viun10g02559 10 39424901 39426795 PCT