Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9974g00002 ATGGATCCTTCTACTGGACAACACCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCAGAACAAGCTCTAAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTACTTCTGCAAGTCTTGCAGAAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCATCTTCATCTTCAAAGAGAATCCAAGATCAAGGATTCACACCCAATCCAAACAACCCTCTCACTGGTTTTCCTTCCTTGTCTTATGACTCCAGCGACCTCACTCTTGCACTAGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAGCATGACTTTTCAATTTTGGGGAATCCCACAAGCACCCCATGTGATATCCTTGGCAACCCTGGCATGCACCACTCTTCCACAAACCCGGGCTTCTTGGATTCTCTTAGAAGTGGGTTCCTTGGAACACAAAGCAATGTTCAGAATCTGTACTATGGATATGGGAATGGAGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGTGGGGTTAGTGGAGAGATGATGCTGCCTTATGATCAAGAAATGAGTGTTGCCACCACCCAAGCAGTCACAGTCACCACCATGAAACAAGAGCTTTGCAATGCCAGGGAGCAAAGTGAGAGTAGGGTGTTGTGGGGTTTCCCATGGCAACTCAATGGAGACACCAACATGGCTGAGCTTGACTCAGGAAGGGCTAATTGGAATGCTCTCAACTCATCCTGGCATGGACTTCTCAATAGTCCTCTAATGTAG 903 0.4762 MDPSTGQHQQMSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSKRIQDQGFTPNPNNPLTGFPSLSYDSSDLTLALARLQKQSCGQLGYDEHDFSILGNPTSTPCDILGNPGMHHSSTNPGFLDSLRSGFLGTQSNVQNLYYGYGNGDMGEVDNGNACGGGVSGEMMLPYDQEMSVATTQAVTVTTMKQELCNAREQSESRVLWGFPWQLNGDTNMAELDSGRANWNALNSSWHGLLNSPLM 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9974g00002 300 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Vium9974g00002 300 MobiDBLite consensus disorder prediction 1 22 - -
Vium9974g00002 300 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vium9974g00002 300 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 193 IPR045174 GO:0003700|GO:0006355
Vium9974g00002 300 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vium9974g00002 300 MobiDBLite consensus disorder prediction 90 121 - -
Vium9974g00002 300 MobiDBLite consensus disorder prediction 83 121 - -
Vium9974g00002 300 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9974g00002 Vium-Chr9974 21350 23699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9974g00002 1 300 C2C2-Dof Transcription Factor Family AT2G28510 39.939 2.22e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium9974g00002 zf-Dof 6.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9974g00002 - - gmx:100799737 494.967