Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9177g00001 ATGGTTTTTACTTCCATCCCAGCTTCTTATTTTGATGCATCCAATTGGCAGCAACAGCAACCAAATAACCAACCCGGAGGCAGTGACTCCAACTCTCAGCAGCTGCTTCAACCACCACCGCCACCACTTCCGGTTGCAATGCAGTCTCATGGAGAGGGTTCAATCAGGCCAGGATCCATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCCACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCCCGCCACTTCTGCAAGACCTGCAGGAGGTACTGGACCAGAGGCGGCGCCTTAAGGAGTGTCCCCGTGGGCGGAGGCTGCAGGAGGAACAAGCGGAGCAAAGGTACCTGCGGCAGTGGCGGNATGGTGAAATAG 429 0.5455 MVFTSIPASYFDASNWQQQQPNNQPGGSDSNSQQLLQPPPPPLPVAMQSHGEGSIRPGSMADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGTCGSGGMVK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9177g00001 142 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Vium9177g00001 142 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Vium9177g00001 142 MobiDBLite consensus disorder prediction 13 34 - -
Vium9177g00001 142 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 132 IPR045174 GO:0003700|GO:0006355
Vium9177g00001 142 MobiDBLite consensus disorder prediction 13 68 - -
Vium9177g00001 142 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9177g00001 Vium-Chr9177 5698 6505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9177g00001 1 132 C2C2-Dof Transcription Factor Family AT2G37590 60.274 1.11e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium9177g00001 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9177g00001 - - vum:124848129 292.737