Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8896g00005 ATGGCCAAAGTACAGAGTGGCCAAGCGAGTGAAGGGATTAAGCTGTTTGGAACAACGATCACCTTGCATGGTAGAGAAACAAGAGAAGATGATAAAGAGAGTGAAGAAGGGACAGAAGAGAAGAGACCTGATAGGATCATACCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGCTACTTCAACAACTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGAGCCCTTCGCAACGTACCCATAGGGGCAGGTCGCCGGAAGGCCAAACCGCCGTGCCATGACCCTACAGGATTTCTCGACGATGGACTCGCATCCACGGTTCAACAACATTTTGGTTTGGAAGATAGGTTGATCTTGGATCAATGGCATGTTGCCACCATCACTCACGGCGATTTCCGGCAGTTTTTTCCTTCTAAAAGGCGGAGGATAAACTCAGGTGAGCATGAAAGTCAAAAAGAGTTTGTTATGAGGCACGAAATCACAGAACATAGGAATGAGATAGAAAGGAAGGAGGGTTTAAAAGGCAGAGACAGTGTAAAGCTTATCTGA 582 0.4742 MAKVQSGQASEGIKLFGTTITLHGRETREDDKESEEGTEEKRPDRIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPPCHDPTGFLDDGLASTVQQHFGLEDRLILDQWHVATITHGDFRQFFPSKRRRINSGEHESQKEFVMRHEITEHRNEIERKEGLKGRDSVKLI 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8896g00005 193 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Vium8896g00005 193 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Vium8896g00005 193 MobiDBLite consensus disorder prediction 23 44 - -
Vium8896g00005 193 Pfam Dof domain, zinc finger 45 100 IPR003851 GO:0003677|GO:0006355
Vium8896g00005 193 PANTHER CYCLIC DOF FACTOR 2 29 101 IPR045174 GO:0003700|GO:0006355
Vium8896g00005 193 MobiDBLite consensus disorder prediction 15 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8896g00005 Vium-Chr8896 45584 47239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8896g00005 8 156 C2C2-Dof Transcription Factor Family AT2G34140 55.758 1.17e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium8896g00005 zf-Dof 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8896g00005 - - vra:106779806 331.643