Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8836g00006 ATGCAGGATATACATTCCATCTGCGGCGGTGACCGCAGGCTCAGACAGCACCACCAGCACCACCACCAGCCGCTAAAGTGTCCACGCTGTGACTCACTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCACGCCATTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTTCGCAATGTCCCCGTCGGCGGTGGTTGCCGCAAGTCCAAACGCTCCAACAAACCCAAAACTACCGCCAACAACACCAACGATAGCAGCAATAACAACAACAACAATCCTTCCCCTTCCTCGCAGATCGCTCCGGCAACCGCGTCCACGACGCCGTCGGCTGCGGAGCCGGAGCGCAACTCGAACTCCCACTCCAGCAGCGAAAGCTCCACCCTAACCGTCACGGAGGCGATGTCGGCGCCGACATCGAAAACTTTGTCTAGCAGCGCTTTGTTCCTGGACAACGTCCGCGAGTCGAAGCTGTTCGCTAACGCTAATAACCCATCTTTGGAGGGCGGTGGCGTTTTCTCTGAGATAGGGAGCTTCAGCAGCCTCATTGCTTCAAATAACGAAGCATTGGGGTTTGGGTTTGGGAATTGCAGTAATAACAACGGCAACAGCAACAGCAACATCCTCGATGCGACGACGTTTCGGTTCGGCGTTACTCATCCGCAGGGGAATAATAATGATCAGGTGCAAGTGGCGGGCGGTAGAGAGCAACAGCAGAATCATGAGGAGTTCGGTACGGCGTCGTTTCTCGATCTGACGGCGCCGCTGGAGTTTTCTTCGTCGGCGCAGAAGGGTGGTCATCATGGAGGGTTTGGGTCGTTGGATTGGCAAGCCGGTGCGGATCAAGGTTTGTTTGATCTCCCTAACACCGTTGATCAACCGTACTGGAGCCACAGTCATTGGTCCGATCAAGATAATCCCTCTCTCTTTCACCTTCCTTGA 963 0.5504 MQDIHSICGGDRRLRQHHQHHHQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTTANNTNDSSNNNNNNPSPSSQIAPATASTTPSAAEPERNSNSHSSSESSTLTVTEAMSAPTSKTLSSSALFLDNVRESKLFANANNPSLEGGGVFSEIGSFSSLIASNNEALGFGFGNCSNNNGNSNSNILDATTFRFGVTHPQGNNNDQVQVAGGREQQQNHEEFGTASFLDLTAPLEFSSSAQKGGHHGGFGSLDWQAGADQGLFDLPNTVDQPYWSHSHWSDQDNPSLFHLP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8836g00006 320 MobiDBLite consensus disorder prediction 69 149 - -
Vium8836g00006 320 ProSitePatterns Zinc finger Dof-type signature. 27 63 IPR003851 GO:0003677|GO:0006355
Vium8836g00006 320 ProSiteProfiles Zinc finger Dof-type profile. 25 79 IPR003851 GO:0003677|GO:0006355
Vium8836g00006 320 Pfam Dof domain, zinc finger 23 79 IPR003851 GO:0003677|GO:0006355
Vium8836g00006 320 MobiDBLite consensus disorder prediction 228 248 - -
Vium8836g00006 320 MobiDBLite consensus disorder prediction 83 149 - -
Vium8836g00006 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 229 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8836g00006 Vium-Chr8836 47745 49762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8836g00006 11 320 C2C2-Dof Transcription Factor Family AT5G60850 39.557 2.01e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium8836g00006 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8836g00006 - - vun:114196340 520.39