Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium856g00005 ATGCCAAACCCAAAGCACCTTCTGCAGGGTACACTGTTCCTCTTGTTAGTTCTTCAGGTCGCGTGCAAATCCACCATCGAGCCATGCTCCAACTCCGACTCATGCAACGCGCTTCTGGGATACACCCTTTACACTGACCTCAAAGTCTCCGAAGTGGCCTCGCTTTTCCAAATCGACCCCATCGCGCTTCTCACAGCGAATGCCATCGACATCTCCTACCCCGACGTCGAGCACCACATCCTCCCTTCTAAGCTCTTCCTCAAGATCCCCATCTCCTGCTCCTGCGTCGACGGCATTCGCAAGTCCGTCGCCACCAACTACAAGACGCGCCCCTCCGACTCTCTACCCTCTATCGCCGACTCCGTCTACGGCGGCCTCGTCTCCTCCGACCAGCTGCGCGAGGCCAATTCCATTCCCGACCCCTCCGTCCTCGATGTGGGACAGAACCTCGTCGTGCCTCTCCCCTGCACCTGCTTTAACGGCTCCGACAACTCTCTCCCCGCCATTTACCTCTCTTACGTCGTTCGACCCGTTGATTCACTCGCTGCCATTGCTGCCAGGTACTTCACCACGCTTACAGATTTGATGAATGTCAATGCCATGGGAAGCACTGCCATTAACGACGGAGATATCCTTGCTGTTCCAATACCCGCCTGTGCTTCGAATTTTCCTAAATCCGCCTCTGATTTTGGCTTGCTTGTCCCTAATGGGAGCTACGCCATTACCGCGGGGCACTGTGTTCAGTGTAGCTGTGGACCAACAAACTTGAATCTGTACTGTATGCCGGCTTCTCTAGCTGTTTCTTGCTCCAGCATGCAATGTAAAGGCAGCAACCTTATGCTTGGGAATGTTACAGTGCAGCAGACTAGTGGTGGTTGCAATGTTACTTCTTGCAATTATGATGGCATTGTCAATGGCACCATAGCAACAATGTTGTCCCCTTCTCTTCAGCCTCGATGTCCAGGTCCACAGGAATTTCCTCCTCTTGTTGCCCCACCTACCACCGTTGCAAAAGACACGGTGTTTGGACCAGCACCAGCACCACTATTCGATGGAGCAGGTCCTATGTCGCCTATATCCTCAGTGGTTCCTTCAACGGGCCTTCCAGGATTCTCTCCTGCAAATGGTCCTATTAGCGGCATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCATTACCCACATTGACGTATGCACTTGTGTTATTGCTTGTCAAGTTCATGATACCCGTGGCATTGTAA 1248 0.5272 MPNPKHLLQGTLFLLLVLQVACKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVATNYKTRPSDSLPSIADSVYGGLVSSDQLREANSIPDPSVLDVGQNLVVPLPCTCFNGSDNSLPAIYLSYVVRPVDSLAAIAARYFTTLTDLMNVNAMGSTAINDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPTNLNLYCMPASLAVSCSSMQCKGSNLMLGNVTVQQTSGGCNVTSCNYDGIVNGTIATMLSPSLQPRCPGPQEFPPLVAPPTTVAKDTVFGPAPAPLFDGAGPMSPISSVVPSTGLPGFSPANGPISGISSGASAACSLVKPLPTLTYALVLLLVKFMIPVAL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium856g00005 415 CDD LysM 107 152 IPR018392 -
Vium856g00005 415 SUPERFAMILY LysM domain 171 216 IPR036779 -
Vium856g00005 415 CDD LysM 172 214 IPR018392 -
Vium856g00005 415 Pfam LysM domain 173 215 IPR018392 -
Vium856g00005 415 Pfam LysM domain 107 153 IPR018392 -
Vium856g00005 415 Gene3D LysM domain 162 226 IPR036779 -
Vium856g00005 415 ProSiteProfiles LysM domain profile. 105 152 IPR018392 -
Vium856g00005 415 SMART LysM_2 106 153 IPR018392 -
Vium856g00005 415 SMART LysM_2 172 215 IPR018392 -
Vium856g00005 415 Gene3D LysM domain 99 159 IPR036779 -
Vium856g00005 415 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 324 - -
Vium856g00005 415 ProSiteProfiles LysM domain profile. 171 214 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium856g00005 Vium-Chr856 55449 58021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium856g00005 16 390 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.693 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium856g00005 - - gmx:100777292 723.776