Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6436g00028 ATGGATAAAGTAGGGCGTGGTTTCAAGAGCTTCAGAACATTATTGGCTGTGGCTTCTATAATCTTCCCTGTTTTGGTCACATTTACTCTCATACACCAGAACTCAGTTTTCGATCTCGTCCATGGATTTAATGTTTTGGCTGTTAGAGCTCACAATGCTTCTAATATTGTCTTGAAACAAGGAGCTCAAAATGCGATCACTACTAATGTCGTGCAGGAAGGAGCTCAAAATGCCTCAATACAAGAGTTTCAAAATGCTACAGTTAAAACTGGGGAAGAAAAGGATCATAATGTTATTCCAGACTCAGCCCCTGTTGATAAGGTTTTGGAAAACAAAAATCAGAATTCTAAGCCTGGAATCTTAGAAGAACCAGCTCAGGCACTACCTCTCTTAGATCTTGGTCCAAAGAATAATTCATCTGAAGATGGGGAGAATGTTTTGTCCCTATCTACTAGCATCACCATTTCTAAAGACAAACTCCTTGATGGGCTTCTGGTTTCATCATTTGATGAAGCATCATGCTTTAGTAGATATCAATCTTACTTGTACCGCAAAAGTTCCTCTCACAAACCTTCTAGATATCTTATCTCCAAGTTACGAAAATATGAACATCTTCATCGAAGTTGTGGACCTTCTACCAAATTCTACAACAAAATCATGAGAAAGGGCACAAAATTTAGCAATAATGATGTTAGTACGAAATGCAAATATCTTGTCTGGACAGCTGTCAATGGATTAGGGAACAGAATAGTAACCTTGGTTGCAGCATTTCTTTATGCTATCCTTACAGATCGTGTTCTGCTTGTCAAATTTGGGACCGATATGTCTGGTCTCTTTTGTGAGCCATTTCCTGATTCCTCATGGTTATTGCCCAGGAGTTTTCCTTATTGGAAAGATCAGAAGCATATTGAAACATATGAAAACATATTAAACAATTTCAAGGTAAACAGTTCACAGGTACTTCTGCCACCATTTCTTATTCTTAATCTACAGCACTCCCATGACCGTCACAATAATTTTTTTCATTGTGATGGAAGTCAAGATCTTCTTCAAAAAATTTCAGTGCTGATTTTACGGTCAGATCAATACTTTGTCCCTTCTCTTTTTATGATTCCATCGTTTAGAGAAGAACTAAGTAAAATGTTCCCCCAGAAGGACACAGTTTTTCACCATCTTGGACGTTACCTTCTTCACCCATCAAACAAAGCATGGCAAATAATTAGAAAAATTTATGAGGCACATCTAGCCAAGGCAAATGAGAGGATAGGTCTGCAGATTAGACTTTTTAATACTCATCGACCACCACATCAAACTGTTGTTAACCAAATAGTATCCTGCACCCTTCAGCATAAGTTGCTGCCTGATTTCAACGCACAAAAGTCAGTGGCTTCTCCTTTGAAGAAGACCTCAAAAGTTGTTTTAGTAGCATCTTTATTCTCAGAATACGGTGAGAAGCTGAAGACTATGTATCAGGCAAATAGAACTGTGACCAGGGAAGTAATAAGAGTTTATCAGCCCAGTCATGAAGAGCGTCAAAAGTCAAATGATGACATGCACAACATCAAGGCATGGACCGAAATATATTTGCTGAGTTTATGTGATGCATTGGTTACTAGCACTAAGTCTACTTTTGGTTATGTTGCTCATAGTCTTGGAGGTTTGAAGCCATGGATTTTGCAGAGGGGATATAATGAAACCATCCCAGATCCACCTTGTCGACATGCCAAGTCCATGGAGCCCTGTTTCCATTATCCACCCAAATATGACTGTAGGGCCAATAGCACAGTTGATTTTACTTCCCTTTTTAATCATATGAAGCATTGTGAAGATGTATCTGGTGGATTGAAGCTGGTTAATGGTAATCACTAG 1869 0.3868 MDKVGRGFKSFRTLLAVASIIFPVLVTFTLIHQNSVFDLVHGFNVLAVRAHNASNIVLKQGAQNAITTNVVQEGAQNASIQEFQNATVKTGEEKDHNVIPDSAPVDKVLENKNQNSKPGILEEPAQALPLLDLGPKNNSSEDGENVLSLSTSITISKDKLLDGLLVSSFDEASCFSRYQSYLYRKSSSHKPSRYLISKLRKYEHLHRSCGPSTKFYNKIMRKGTKFSNNDVSTKCKYLVWTAVNGLGNRIVTLVAAFLYAILTDRVLLVKFGTDMSGLFCEPFPDSSWLLPRSFPYWKDQKHIETYENILNNFKVNSSQVLLPPFLILNLQHSHDRHNNFFHCDGSQDLLQKISVLILRSDQYFVPSLFMIPSFREELSKMFPQKDTVFHHLGRYLLHPSNKAWQIIRKIYEAHLAKANERIGLQIRLFNTHRPPHQTVVNQIVSCTLQHKLLPDFNAQKSVASPLKKTSKVVLVASLFSEYGEKLKTMYQANRTVTREVIRVYQPSHEERQKSNDDMHNIKAWTEIYLLSLCDALVTSTKSTFGYVAHSLGGLKPWILQRGYNETIPDPPCRHAKSMEPCFHYPPKYDCRANSTVDFTSLFNHMKHCEDVSGGLKLVNGNH 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6436g00028 622 Gene3D - 232 284 - -
Vium6436g00028 622 PANTHER FUCOSYLTRANSFERASE 2-RELATED 138 619 IPR004938 GO:0008107|GO:0016020|GO:0042546
Vium6436g00028 622 Gene3D - 405 560 - -
Vium6436g00028 622 FunFam Galactoside 2-alpha-L-fucosyltransferase 233 284 - -
Vium6436g00028 622 Pfam Xyloglucan fucosyltransferase 155 591 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6436g00028 Vium-Chr6436 150030 153056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6436g00028 155 618 Xyloglucan Fucosyltransferase1 AT2G03220 51.586 4.98e-166 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6436g00028 K13681 - gmx:100799776 920.613