Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium6198g00013 ATGCAAGATCCGACAGCATTTCAAGGTTTGAAGCACCCTCAGTTTCCCGAACAAGAACAACTCAAATGCCCGCGTTGTGACTCCACGAACACCAAATTCTGTTACTACAACAACTACAACCTCTCTCAGCCGCGTCACTTTTGCAAGAACTGCAGAAGGTACTGGACAAAGGGTGGTGCTTTGAGAAACATCCCTGTCGGGGGTGGAAGCAGAAAGAGCATAAAACGTTCGTCAACCTCAAAACGCTCCTCTGCGCCGGCTTCCTCTGCGGTTTCTGAGTCTGACCCGACCCGGATTTGCACCAACCCGGTCGAGCAAGACAGTAGGGTGCTCAACATTGGTGGCACCTTTAGTTCCCTGTTGGCTTCATCTGGCCACTTTGGAACCCTCTTGGATGGTCTGAATCCAACTGGGTCAGGTCTCAAAATGGGTGAATTTGGGCAGGATGTGAGTTCTGACCTGGGTTTGAATTCGGATTCGGGTTCAAACCCGGGTTTGCAGCTTCAGAGTAATGGGAGTTCGGAGGGTTTTCTGGGTATGCCGAATGGGGAATCGACCTGTTGGAATGGTGGCCATGGTTGGTCCGATCTTGCAATATACACACCTCGCCCGAGTTTTCAATAG 624 0.5096 MQDPTAFQGLKHPQFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKSIKRSSTSKRSSAPASSAVSESDPTRICTNPVEQDSRVLNIGGTFSSLLASSGHFGTLLDGLNPTGSGLKMGEFGQDVSSDLGLNSDSGSNPGLQLQSNGSSEGFLGMPNGESTCWNGGHGWSDLAIYTPRPSFQ 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium6198g00013 207 Pfam Dof domain, zinc finger 19 73 IPR003851 GO:0003677|GO:0006355
Vium6198g00013 207 MobiDBLite consensus disorder prediction 152 172 - -
Vium6198g00013 207 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 144 IPR045174 GO:0003700|GO:0006355
Vium6198g00013 207 MobiDBLite consensus disorder prediction 65 101 - -
Vium6198g00013 207 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Vium6198g00013 207 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Vium6198g00013 207 MobiDBLite consensus disorder prediction 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium6198g00013 Vium-Chr6198 62854 64567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium6198g00013 1 131 C2C2-Dof Transcription Factor Family AT1G51700 50.633 1.36e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium6198g00013 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium6198g00013 - - gmx:100790822 328.561