Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium5524g00020 ATGGCTGAGGAATCTCAAGGGATTAAGCTCTTTGGCGCAATGATTAGACTCAACAGTGAGGAGGTCAAGAAGGGAGAAAAAGGAAGGGAATACAAGAGGGAGGAGAAGAGAACAGAGAAGATAATACCGTGTCCTAGATGCAAGAGCATGGAAACTAAATTCTGCTACTTCAATAACTACAACGTTAATCAGCCAAGGCATTTTTGTAAGAGCTGCCAGAGGTATTGGACTGCTGGTGGGGCCCTCCGCAACGTCGCTGTCGGTGCCGGCCGTCGGAAGGGCAAGCCGCCGTGTCATGGTGCCGCTGAGTTCCCCGATGGGGCTGTCTATGAAAGTTCGGAAGACGAGAACAAATTTGAGATTGGAAGTAGGTTGGTTTCAGAAGAGGTTCACAATGATTTTCGGCAAATTTTCCCGGCGGCCAAGCGGCGGAGGACTCCATCAGGTGAGCATGAAGGTCAATAA 465 0.4968 MAEESQGIKLFGAMIRLNSEEVKKGEKGREYKREEKRTEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKGKPPCHGAAEFPDGAVYESSEDENKFEIGSRLVSEEVHNDFRQIFPAAKRRRTPSGEHEGQ 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium5524g00020 154 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Vium5524g00020 154 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Vium5524g00020 154 PANTHER CYCLIC DOF FACTOR 2 26 100 IPR045174 GO:0003700|GO:0006355
Vium5524g00020 154 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium5524g00020 Vium-Chr5524 121237 123009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium5524g00020 2 150 C2C2-Dof Transcription Factor Family AT1G29160 49.143 6.91e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium5524g00020 zf-Dof 4.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium5524g00020 - - gmx:100820604 213.772