Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4593g00024 ATGGAGAGAGGGTGGAAGGCTAACAGTGTTGAGATTTCACCAAATTGTCCCAGGTGTGGTTCTTCCAACACCAAGTTCTGCTATTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTACCAATTGGTGGTGGCTGCCGGAAAAGTAGAAGGGGTAAATATAATAAGGCCCTAAGACAAGCCCATGGCCCAGTTGGGCATTCTGATGATTTAAGGCCTTCATCTTCAGTGGTGTCTGATGGGCCAAATATTGATCTTGCGCAAGTCTATGCAAGTTTTCTCAATGTGAAGCCAGATCAAGTGCAAACAGTTTGCTCTCCTTCTCCTGAGTATTCAAGCATAGTTAACACTGATTTTGGCCACAGTGTTTTGTCTGAAGAGCATCATGGTCTTACTGGGCGTTTGCATTTTCATGAACAGCCCAGAGAATCCCATTTTGGTGAGGATATCGAAATGTACTTTTGCGGGTTGAACTCTATCCAGAAGCATCAGGAGTATAGTAGCAGTCATGATACAACGGTTACAAAAACAAATTTTGAGTTGCCTCCATTACCAGGTGAAGTTGCAGAAACCTCACATGGCAATGTGTTGTGGTCCAATTCTGAGATGATGGTAGATCATGCTTTGCAAGCCACCCAATGGCCCCTTCTTGGACCAGAAGCTTATGATGCAGACTTCTTAATGGGTAACTGTTGGAGCCACTTCGATTTTCCAAGGGATGCTTCTTTTTCCATGCCTTGA 792 0.4482 MERGWKANSVEISPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGKYNKALRQAHGPVGHSDDLRPSSSVVSDGPNIDLAQVYASFLNVKPDQVQTVCSPSPEYSSIVNTDFGHSVLSEEHHGLTGRLHFHEQPRESHFGEDIEMYFCGLNSIQKHQEYSSSHDTTVTKTNFELPPLPGEVAETSHGNVLWSNSEMMVDHALQATQWPLLGPEAYDADFLMGNCWSHFDFPRDASFSMP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4593g00024 263 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 170 IPR045174 GO:0003700|GO:0006355
Vium4593g00024 263 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Vium4593g00024 263 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Vium4593g00024 263 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4593g00024 Vium-Chr4593 212769 213791 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4593g00024 5 258 C2C2-Dof Transcription Factor Family AT3G52440 39.552 3.08e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium4593g00024 zf-Dof 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4593g00024 - - vun:114179652 506.908