Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3729g00002 ATGGGTGCTCAAAAAGGGGTTGTTTGGATGGCGAGAGTTGTAGCGGTGGTTGCAATCGCGGTGGTGGCGAGCGTAGAGGCCCAATTCGTGTGCAACAGCGCGAACAACTCCAGGTGTGGCGCCCTCATAGGGTACTCTCACACGAACGGCACCACCCTTGGCGACATCCAAACCCTCTTCACCGTGAAGAAACTTGTGGACATCCTAGGCGCCAACAACCTCCCGAGCAACACCCCAAAGAGCCACGTGGTGGGGCCCAATGAGGTTGTGAAGGTGCCGTTCCCGTGCAGGTGCAGCAACGGGACTGGACTCTCGGACGGGGTTCCACTTTATAAGATAAAAAAGGACGACACGCTGTACAACATAGCGACGACGACGTTTGGGGGTTTGGTGAAGTATCCTCAGATCGCGGAGGCGAATAAGTTACCTGACGAGAATAACATCACCACCGGGGACACGCTTTATATTCCGCTGCCGTGTAGCTGCGATGCGGTGGATGGGAACAGAGTGGTGCACTATGCGCACCTGGTGTTGATGGGGAGCACGGTGGAGGGAATTGCTGAACAATTTGGCACCACTCAGCAGACCCTCCTCACTCTGAATGGCATTTCCGACCCCAAAAAGCTTCAGGGCGGTCAGATTCTTGATGTTCCTCTTCGAGCTTGTTCCTCGAGTGTGAAAAATGATTCCTTGGACTATCCATTGCTTGTTGCAAATTCTTCTTACGCCTATACTGCCCACGAATGCGTCAAATGCAGCTGTGAGTCCAGCAACAACTACATATTACAATGCGAGAAATCCAACCTCAAACCTACCAACTGGTCCACCTGCCCTCCTGCGCAATGTTCAAGCAACGTCTTCATTGGCAACACCACTTCCTCTACTGATTCCTGCAACCGCACAGTCTGTGCCTATACTGGTTATACATTCAACAATATCTCAGCAGAACTTGTAACGCAGAACACTTGTGCAGTGCCACCGAGTCCTTCAGGAGGATCTAGTGGTTCTGGTTCAGGAGCTCCCGGGAGCACTTTGCAAGGCTTGCTTTGGAGTAAACTTTTCATTGTTATTCACTTTGTTCTCTTTCTTGTCTATGTTTTGTAG 1104 0.5136 MGAQKGVVWMARVVAVVAIAVVASVEAQFVCNSANNSRCGALIGYSHTNGTTLGDIQTLFTVKKLVDILGANNLPSNTPKSHVVGPNEVVKVPFPCRCSNGTGLSDGVPLYKIKKDDTLYNIATTTFGGLVKYPQIAEANKLPDENNITTGDTLYIPLPCSCDAVDGNRVVHYAHLVLMGSTVEGIAEQFGTTQQTLLTLNGISDPKKLQGGQILDVPLRACSSSVKNDSLDYPLLVANSSYAYTAHECVKCSCESSNNYILQCEKSNLKPTNWSTCPPAQCSSNVFIGNTTSSTDSCNRTVCAYTGYTFNNISAELVTQNTCAVPPSPSGGSSGSGSGAPGSTLQGLLWSKLFIVIHFVLFLVYVL 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3729g00002 367 CDD LysM 111 156 IPR018392 -
Vium3729g00002 367 SUPERFAMILY LysM domain 173 218 IPR036779 -
Vium3729g00002 367 SMART LysM_2 174 218 IPR018392 -
Vium3729g00002 367 SMART LysM_2 110 157 IPR018392 -
Vium3729g00002 367 Pfam LysM domain 179 218 IPR018392 -
Vium3729g00002 367 Pfam LysM domain 111 157 IPR018392 -
Vium3729g00002 367 Gene3D LysM domain 164 230 IPR036779 -
Vium3729g00002 367 Gene3D LysM domain 110 163 IPR036779 -
Vium3729g00002 367 ProSiteProfiles LysM domain profile. 173 217 IPR018392 -
Vium3729g00002 367 SUPERFAMILY LysM domain 110 158 IPR036779 -
Vium3729g00002 367 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Vium3729g00002 367 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 325 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3729g00002 16 313 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 49.835 7.65e-97 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3729g00002 - - gmx:100804190 511.531