Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3325g00006 ATGGGGTTATCTTCTTTGCACGTCTGCATGGATTCGTCAGATCATTGGTTGCAGGGCACAATTCACGAGGAGTCTGGAATGGATTCTTCTTCTTCACCCTCTGGGGACATGCTTACATGCTCAAGGCCCATGATAGAGAGGAGGCTAAGACCCCCACATGACCAAGCTCTAAAGTGCCCCAGGTGTGACTCAACCCACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCAAGGTACTTCTGCAAGACCTGCAGAAGGTACTGGACCAAAGGAGGCACTCTTAGGAACATTCCTGTTGGTGGAGGCTGCAGAAAGAACAAGAAAGTCTCTGCAAAAAAATCCAATGACCACCCATTAGTTAACAATCAAATTAGTCAAACACAGCCCCCACCCTCCTCCTACCATCACAACCCCAAAGACCTTCAACTCTCTTTTCCAGATGTACAATTTTCCCACCTCAGCAACTTGCTTGGGACGAATGCAGGGTCACTGGGAAACCCTAGCTTTATGGAGGGTAAGTATGGTATTGGCATGATCGAGAACCCTAGGCCAATTGACTTCATGATGGAGAGCAAGCTGGAGGGCATAATTGGGAGTGGTAGTTCTAGGAATTTTGATTTTTTTGGAAACAGTGACATGGGCATGGGTGCTGGGCTGGGAGATATGCATGGTAATGCTCAAAATGGGTTGCCACCAAATTTTCACGGTCTTTGCCCCTCAGCTTTTGGTGGCATGTCTATGTCTCTTGATGGCAACAACACTGGCAATGGTGCTAATAACTACTTAATGGACTCTTGCCAACGCTTGATGCTGCCATACGATGCCAATGAGGACCATAATGCCTCAATTGATGTGAAGCCAAACCCTAAACAGCTATTGTCCCTCGAATGGCAAGACCAGGGTTGCTCTGATGCAGGCAAAGATTCTTTTGGGTATCTCAACGGTCCAGGATCATGGACTGGCATGATGAACGGCTATGGATCTTCCACCACAAACCCTTTGGTCTAA 1017 0.4749 MGLSSLHVCMDSSDHWLQGTIHEESGMDSSSSPSGDMLTCSRPMIERRLRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSAKKSNDHPLVNNQISQTQPPPSSYHHNPKDLQLSFPDVQFSHLSNLLGTNAGSLGNPSFMEGKYGIGMIENPRPIDFMMESKLEGIIGSGSSRNFDFFGNSDMGMGAGLGDMHGNAQNGLPPNFHGLCPSAFGGMSMSLDGNNTGNGANNYLMDSCQRLMLPYDANEDHNASIDVKPNPKQLLSLEWQDQGCSDAGKDSFGYLNGPGSWTGMMNGYGSSTTNPLV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3325g00006 338 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Vium3325g00006 338 MobiDBLite consensus disorder prediction 108 139 - -
Vium3325g00006 338 Pfam Dof domain, zinc finger 54 111 IPR003851 GO:0003677|GO:0006355
Vium3325g00006 338 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 44 201 IPR045174 GO:0003700|GO:0006355
Vium3325g00006 338 MobiDBLite consensus disorder prediction 118 139 - -
Vium3325g00006 338 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3325g00006 Vium-Chr3325 118919 120768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3325g00006 1 197 C2C2-Dof Transcription Factor Family AT5G62940 49.099 2.91e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium3325g00006 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3325g00006 - - gmx:778107 593.578