Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3015g00002 ATGGACACAGCTCAGTGGGCACAGGGTATTGGAGTGGTTAAACCTATGGAAGGTTCAAAGCCTCCTCCTATGTTGGAGAGAAGGGCGAGGCCTCAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCCACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCCCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTCAGAAACGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCAACTCCATCAGCTCCGTCACCAGCATCAGCACCAACAAAGAAGCTTCCTGATCTCACACCACCAAATTTCCCTCAATCGGCTTCTCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACTTAGCATATCCTCCAGCCGAGGACTATAACACTGTGTCTAAGTTCATCGAGGTTCCTTACACCACGGAATTAGACAAGGGCAGTCTTCAAAACGCCACTTCCTCATCGACACCGTCTCAGTTGTCTGCCATGGAGCTTCTCAAGACTGGGATTGCTTCCTCAAGGGGTTTAAACTCCTTCATGCCAATGTATAATTCAACTGGGTTTCCTTTGCCTGACTTCAAGCCACCACCTGGCCTTAACTTCAGTCTGGAGGGCTTTGAAAATGGTTACGGGGGTCTTCAGGGAATTCAAGAGGGTCCTACTGGTGCAAGGATCTTGTTTCCTGTGGAGGATTTAAAGCAGCAGGTTCCAACCACAAATGAGTTCGATCAGCAGAATAGAAGTCAAGGGGATTCATCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCGTGGTAG 837 0.4827 MDTAQWAQGIGVVKPMEGSKPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSAPSPASAPTKKLPDLTPPNFPQSASQDPKIHQGQDLNLAYPPAEDYNTVSKFIEVPYTTELDKGSLQNATSSSTPSQLSAMELLKTGIASSRGLNSFMPMYNSTGFPLPDFKPPPGLNFSLEGFENGYGGLQGIQEGPTGARILFPVEDLKQQVPTTNEFDQQNRSQGDSSGYWNGMLGGGSW 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3015g00002 278 MobiDBLite consensus disorder prediction 252 268 - -
Vium3015g00002 278 Pfam Dof domain, zinc finger 34 91 IPR003851 GO:0003677|GO:0006355
Vium3015g00002 278 MobiDBLite consensus disorder prediction 252 278 - -
Vium3015g00002 278 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Vium3015g00002 278 MobiDBLite consensus disorder prediction 1 33 - -
Vium3015g00002 278 MobiDBLite consensus disorder prediction 111 125 - -
Vium3015g00002 278 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 168 IPR045174 GO:0003700|GO:0006355
Vium3015g00002 278 MobiDBLite consensus disorder prediction 78 125 - -
Vium3015g00002 278 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Vium3015g00002 278 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3015g00002 Vium-Chr3015 23978 25949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3015g00002 24 278 C2C2-Dof Transcription Factor Family AT3G61850 45.357 2.50e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium3015g00002 zf-Dof 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3015g00002 - - gmx:778114 486.108