Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2651g00002 ATGAGAAACTATCAGCAGTTTGTTTGGCCTCAGATCTTGTGTTTGATGTTACTGAGTTTTGAATATGAAGTTGAAACAAAGTCCACCATTGAAGCATGCAATTCCTCAGACTCATGCCCCTCTCTCCTCTCTTATTTCTTGCCATGGGACTCCAAAGTATCAGAAATCGCGACTCGTTTCCACGTAAACGCCTCTGATATCTTGGCGTCGAACTCTCTCTTCCCCATAACATCATCAAGTGCACACCAAATCCTGAGGGCCAAAACGTTTGTCAAAATACCCATCTTCTGCTCTTGTGTGGATGGCATCCGAAGGTCCATGTCAACCATTTACACTGTTCGTGCAGCAGACACAGCTGCGTCCATATCAGAAGGTTATGGTGGGTTGGTCAGTGGTGAACAAATCAAGATTCTGAACAGCATCAATGGCAGCAACCCCTTGAGGAATGGAGGCACCCTTGTTATTCCACTGCCATGCACATGTTTTAACAACGTTAACAATGGGGGAACCGCTGTTTACATGTCATATGTTGTACAGATAAGAGAGAGCCTGAGCAGCATAGCAGCGAAGTTTGGTACAACTATTTCGGACTTGAAAGCTGTCAATGGCTTTTCGGAACCTACAGTAGATCCTGGAGACATTATATCTCTTCCCATTGCAGCATGTTCATCAGCAACCTTGAAATGGTACGATGAGAGTATGATAGTCCCAAATGGCTCATATACATTAACTGCCAGCAACTGCATCAAATGCAGTTGCCAACCAATGGATATTACGATGCGATGCGTTCCTTCTGGGCTAGCTGTTCCCTGCTATAACTTACGTTGCAAACAATCCAATCTTATTATTGGCAGTGAATGTGTGGAGCATTCAGAAACAGCTTGCAATCTGATCCAATGTGTTTACCGTGGCCACAGGGGTGGAAAAATTCTGAGTAGTATGAAGAACTCTTCTTACCTCCAGTGCCCTGATAATGTCTGTCATAGACGAGCATCATGTTGGTCTTTCTCATCATCTGAAGACCCATTTGGTATGTCTCCGAAGACATCCTCCTCCTTGCCATTGCCAGTTTCTAAAGCTTCTCAAAAGACAAGTGCCTTCAATGGAAGGCTTGCTCGATTTTTAATCAATCTGCTGCAAATATTCTTATTTTTAAAGTTTATCCTTTATTTTCTGATTTGA 1182 0.4323 MRNYQQFVWPQILCLMLLSFEYEVETKSTIEACNSSDSCPSLLSYFLPWDSKVSEIATRFHVNASDILASNSLFPITSSSAHQILRAKTFVKIPIFCSCVDGIRRSMSTIYTVRAADTAASISEGYGGLVSGEQIKILNSINGSNPLRNGGTLVIPLPCTCFNNVNNGGTAVYMSYVVQIRESLSSIAAKFGTTISDLKAVNGFSEPTVDPGDIISLPIAACSSATLKWYDESMIVPNGSYTLTASNCIKCSCQPMDITMRCVPSGLAVPCYNLRCKQSNLIIGSECVEHSETACNLIQCVYRGHRGGKILSSMKNSSYLQCPDNVCHRRASCWSFSSSEDPFGMSPKTSSSLPLPVSKASQKTSAFNGRLARFLINLLQIFLFLKFILYFLI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2651g00002 393 Pfam LysM domain 176 218 IPR018392 -
Vium2651g00002 393 Pfam LysM domain 111 156 IPR018392 -
Vium2651g00002 393 ProSiteProfiles LysM domain profile. 109 155 IPR018392 -
Vium2651g00002 393 SMART LysM_2 175 218 IPR018392 -
Vium2651g00002 393 SMART LysM_2 110 156 IPR018392 -
Vium2651g00002 393 ProSiteProfiles LysM domain profile. 174 217 IPR018392 -
Vium2651g00002 393 SUPERFAMILY LysM domain 174 218 IPR036779 -
Vium2651g00002 393 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 23 325 - -
Vium2651g00002 393 CDD LysM 175 217 IPR018392 -
Vium2651g00002 393 Gene3D LysM domain 103 168 IPR036779 -
Vium2651g00002 393 Gene3D LysM domain 169 226 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2651g00002 Vium-Chr2651 4744 8466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2651g00002 1 323 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 43.558 8.04e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2651g00002 - - vra:106767878 725.702