Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2418g00004 ATGCCCTGTACTGAAAACTCTGAGCAACTAGAGAATTATTCTGATTCAACGGATAGCAAACAAGAGACCCTATATAATCGGCAGGAAAATGAGTCAAAAGTAAATTCCAAAACAGTGGAAAATAATACAGAGAGTAGCAGTACAGATCAAGATAAAATCTTCAAGAAACCAGACAAAATTCTGCATTGTCCTCGATGCAACAGTTTAGACACCAAATTCTGTTATTTCAATAACTACAATGTGAACCAACCTCGGTATTTCTGCAAGAACTGCCAAAGGTACTGGACTGCAGGTGGAACCATGAGAAATGTTCCAGTGGGTGCGGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCGGCACATTATTGTATCTTGTGACGGAATTCCAACTACAAGTGACTCTTCTTGTCACCAACTTGCCACAACACTTCAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTGTTGAAATTTTGTCCGGATGCCCCTCCTCTTTGTGAATCCATGGAGTCAATGCTTAATCTTAAAGAACAAAATCGAAGTGCTGATGAAAATACTGTCAATTATGCAGAAAAAGGGGAGGAGGAAGTATCCTTATGTGGATCATCATCTATGACCAATGCTTACACTCCAAGAAACAAATCAACTGAACCAACTGCATCAAAACCTATGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCCAGATTGGAACAATGTTGCTTCCACTGCATCACTTCACCCCTCTTCACTACAAATGTGTAACCCTTATAACAGTGCCGACCCTGCTTCAATGCAGTGGTGTCCTACACCGATCATGGCAGTTCCAACAATTTGCCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGAGTGGACCACCTGTGTATGGTGGTGGAACAGGAGCTGCTTCAATGGGTTTCAATGCCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGCTGCTCAGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGACAATCTTTCAACAGATGAAGAAAAATCAGACATGTGTATCTTGGCCTCATCAGGAACCAACCCTGAATGTGTACCAGAAGGTACTATTTCAAAAAGGGCAAAGCCTAGAGAAGGCAAAGACCGTGTTTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTTCAAGAGGGCATGTGA 1242 0.4316 MPCTENSEQLENYSDSTDSKQETLYNRQENESKVNSKTVENNTESSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVSCDGIPTTSDSSCHQLATTLQSAAVFRSSTDNGTVLKFCPDAPPLCESMESMLNLKEQNRSADENTVNYAEKGEEEVSLCGSSSMTNAYTPRNKSTEPTASKPMQCYPVPPWIFPWNPDWNNVASTASLHPSSLQMCNPYNSADPASMQWCPTPIMAVPTICPPSFPLQFVPGSYWSGPPVYGGGTGAASMGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDNLSTDEEKSDMCILASSGTNPECVPEGTISKRAKPREGKDRVLGVSQILEANPAAISRAHAFQEGM 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2418g00004 413 MobiDBLite consensus disorder prediction 1 21 - -
Vium2418g00004 413 PANTHER CYCLIC DOF FACTOR 2 6 412 IPR045174 GO:0003700|GO:0006355
Vium2418g00004 413 ProSitePatterns Zinc finger Dof-type signature. 63 99 IPR003851 GO:0003677|GO:0006355
Vium2418g00004 413 ProSiteProfiles Zinc finger Dof-type profile. 61 115 IPR003851 GO:0003677|GO:0006355
Vium2418g00004 413 MobiDBLite consensus disorder prediction 333 355 - -
Vium2418g00004 413 Pfam Dof domain, zinc finger 58 115 IPR003851 GO:0003677|GO:0006355
Vium2418g00004 413 MobiDBLite consensus disorder prediction 1 51 - -
Vium2418g00004 413 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2418g00004 Vium-Chr2418 17018 19717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2418g00004 8 411 C2C2-Dof Transcription Factor Family AT5G39660 32.287 1.26e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium2418g00004 zf-Dof 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2418g00004 - - ccaj:109792807 641.728