Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2418g00001 ATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCCAGTTCTCAGATGGGATATCAGATTCAGGCCAACTCTGCAACCATGCTTAAATTTCAGAATGCTTACAATGGCTTAAAGAAAAAAGAAGTTGAAATGCCCTGTACTGAAAACTCTGAGCAACTAGAGAATTATTCTGATTCAACGGATAGCAAACAAGAGACCCTATATAATCGGCAGGAAAATGAGTCAAAAGTAAATTCCAAAACAGTGGAAAATAATACAGAGAGTAGCAGTACAGATCAAGATAAAATCTTCAAGAAACCAGACAAAATTCTGCATTGTCCTCGATGCAACAGTTTAGACACCAAATTCTGTTATTTCAATAACTACAATGTGAACCAACCTCGGTATTTCTGCAAGAACTGCCAAAGGTACTGGACTGCAGGTGGAACCATGAGAAATGTTCCAGTGGGTGCGGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCGGCACATTATTGTATCTTGTGACGGAATTCCAACTACAAGTGACTCTTCTTGTCACCAACTTGCCACAACACTTCAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGAAAAAGGGGAGGAGGAAGTATCCTTATGTGGATCATCATCTATGACCAATGCTTACACTCCAAGAAACAAATCAACTGAACCAACTGCATCAAAACCTATGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCCAGATTGGAACAATGTTGCTTCCACTGCATCACTTCACCCCTCTTCACTACAAATGTGTAACCCTTATAACAGTGCCGACCCTGCTTCAATGCAGTGGTGTCCTACACCGATCATGGCAGTTCCAACAATTTGCCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGAGTGGACCACCTGTGTATGGTGGTGGAACAGGAGCTGCTTCAATGGGTTTCAATGCCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGCTGCTCAGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGACAATCTTTCAACAGATGAAGAAAAATCAGACATGTGTATCTTGGCCTCATCAGGAACCAACCCTGAATGTGTACCAGAAGGTACTATTTCAAAAAGGGCAAAGCCTAGAGAAGGCAAAGACCGTGTTTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTTCAAGAGGGCATGTGA 1293 0.4346 MSNKDPGIRLFGRKIPLPESQIPASSQMGYQIQANSATMLKFQNAYNGLKKKEVEMPCTENSEQLENYSDSTDSKQETLYNRQENESKVNSKTVENNTESSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVSCDGIPTTSDSSCHQLATTLQSAAVFRSSTDNEKGEEEVSLCGSSSMTNAYTPRNKSTEPTASKPMQCYPVPPWIFPWNPDWNNVASTASLHPSSLQMCNPYNSADPASMQWCPTPIMAVPTICPPSFPLQFVPGSYWSGPPVYGGGTGAASMGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDNLSTDEEKSDMCILASSGTNPECVPEGTISKRAKPREGKDRVLGVSQILEANPAAISRAHAFQEGM 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2418g00001 430 ProSiteProfiles Zinc finger Dof-type profile. 116 170 IPR003851 GO:0003677|GO:0006355
Vium2418g00001 430 MobiDBLite consensus disorder prediction 350 372 - -
Vium2418g00001 430 MobiDBLite consensus disorder prediction 83 103 - -
Vium2418g00001 430 PANTHER CYCLIC DOF FACTOR 2 3 429 IPR045174 GO:0003700|GO:0006355
Vium2418g00001 430 Pfam Dof domain, zinc finger 113 170 IPR003851 GO:0003677|GO:0006355
Vium2418g00001 430 MobiDBLite consensus disorder prediction 60 76 - -
Vium2418g00001 430 MobiDBLite consensus disorder prediction 60 106 - -
Vium2418g00001 430 ProSitePatterns Zinc finger Dof-type signature. 118 154 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2418g00001 Vium-Chr2418 16680 19717 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2418g00001 5 428 C2C2-Dof Transcription Factor Family AT5G39660 30.452 2.26e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium2418g00001 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2418g00001 - - pvu:PHAVU_004G054000g 738.413