Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium22g00001 ATGGTACCACCAGAAGGCATGCCACCAACACCGAAAGACCATGAGCTCACTGAGGGCCGCAAAACGACGAGGCCGCCACCGGAACAAGGTGTGAAGTGCCCGAGATGTGACTCACCAAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAGCCCAGGCACTTCTGCAAGACCTGCAGGAGGTACTGGACCAACGGGGGTGCCTTGCGCAACGTCCCGATAGGAGGGGGTTGCAGGAAGAACAAAAAGGTGAAACCTTCTTCCTCCGCTTCCTCTTCCTCCTCCTCCAGACTCTCCTGTGACCCTAAAGACTTCAATTTTCATGGTCTCTCAGTTCCTCCTTCCGTTGACTTCAACCTCGGAGGGATACCCTTTCCCTCCAGGCTCACTACTTTCAACACTCAACACCACCTCCCAACACCCCCCACTGGGGTGTTCAACCAGTTCTCTTCTTTTGGGGACGTTCCATCATCTTCCACCAGTTCTCTTTCTGCTTTGTCTGCCTTCCAGCTTGACCCCCCTGCTGCTGTTTCAAACCCTCTCTTGGGTCTCGTTCCGCCCAACCCTGACCTCTGGGCTCTACGTAGGTCAGAAAGGGCCTCACTCTCTGATCCATTGAACAGTGCAATGCAAACCCTTCAGACCATGGAAGCCATGAACGTTCACAGCAACCTTGCTTCTTCAATTGAGTCGCTGAGCAACATCAACCAGGACTTGCACCTGAAGCTGCAGCAGCAGCGCATGGCGACAATGATGTTCGGTGGGGACAGCCAGAAAGGTGAGAGCAGCGCTGCCCTGAATGGGTTTGGGAATCAGAAGCTGCTACAACCGGTTTCGTTTCAGAACCTTGCGATTTCGAAGCCAGAGAACTTGCCAGCTGGCAGTTCCATAAATGGTGGTCCATGTGGGGAGACAGTTACTGCAGCATCCACTGAATGGTTCTTTGGGAATTCCTTTCCCTCAGTGTCTCCTTCAACAAGCAATGGCGGTGCCAATGTTAACCACATTAGCAACGATGCAAACAACAACAACAGCTGGACTGGTTCCCTTGCCTGGGGAGATTTGCAGCAGCAACCATACACCGCTTTGCCCTAG 1101 0.5304 MVPPEGMPPTPKDHELTEGRKTTRPPPEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKVKPSSSASSSSSSRLSCDPKDFNFHGLSVPPSVDFNLGGIPFPSRLTTFNTQHHLPTPPTGVFNQFSSFGDVPSSSTSSLSALSAFQLDPPAAVSNPLLGLVPPNPDLWALRRSERASLSDPLNSAMQTLQTMEAMNVHSNLASSIESLSNINQDLHLKLQQQRMATMMFGGDSQKGESSAALNGFGNQKLLQPVSFQNLAISKPENLPAGSSINGGPCGETVTAASTEWFFGNSFPSVSPSTSNGGANVNHISNDANNNNSWTGSLAWGDLQQQPYTALP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium22g00001 366 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Vium22g00001 366 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Vium22g00001 366 MobiDBLite consensus disorder prediction 1 32 - -
Vium22g00001 366 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 249 IPR045174 GO:0003700|GO:0006355
Vium22g00001 366 MobiDBLite consensus disorder prediction 86 101 - -
Vium22g00001 366 MobiDBLite consensus disorder prediction 76 101 - -
Vium22g00001 366 Pfam Dof domain, zinc finger 30 85 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium22g00001 Vium-Chr22 8239 9624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium22g00001 9 366 C2C2-Dof Transcription Factor Family AT5G65590 35.000 1.98e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium22g00001 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium22g00001 - - ccaj:109819084 397.512