Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium164g00014 ATGCACGAAATTAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTTGACATAGAAGAAGAAGAAGAGGAAGAAGACGAGAGTGGTGATGGAAAAGAGGAAGAGAAAGAAGAGGATAAGGATGCTGGAGTTGAAAATGTTACTGAGGAAGACCTAGAAGCTGATCCTTCTCCGAGTGCAGGAGAGACTAAAGATTCAGGTACATCCCCTGAGGCTATTGTGAACCCCAAAACACCTTCCATAGAAGAAGAAACGGCAAAATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCGGCTAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTATAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGCGGAATGTTCCTGTGGGGGCAGGGCGGCGAAAGAACAAGAACTCTGCCTCGCACTATCGGCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCTCCCAATGGAACTCATCTTCCACCTTTGAAAGGCAATGGTAGAGTTCTCAGCTTTGGATTAGATGCACATGCACCGATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAGGTTCCCGATAGCACAACAAATGGGTTTCAGCATGGCTTTGAGGACCAAAGACTCCCTATTCCTCGCAAAAGCGGGGAAAATGGTGATGACTCTTCGAATACATCTTCCATTACAGTTTCCAATTCCATGGGAGAAAGTAGCAAAAGCACCTTCCAACCACAACCAGTGCTCCAACATCATGGTTTCCTTCCTCAACTTCCGTGTGTTCCTTGGCCCTATACATGGAATTCTCCCGTTCCCCCACCTGCTTTGTGTCCTTCCGGATATGCCTTATCATTCTATCCTCCTGCTACATTCTGGAACTGTGGAATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTTTCATCTGCTTCAAACCCGAACTCTCCGGGCTCCGCTCCAAACTCTCCGACTCTGGGGAAGCACTCGCGGGACGGAGACATGATCAAGCAAGACTCTTTGCACAAAGAAGAAGCTTCAAGGCCAAGAAACGGGGGTGTTTTGGTTCCAAAAACGTTGAGAATCGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTAAGTGGGGCAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGAGGAAAAGAATCATGTTGAAGCCTCTCCAGTGTTGATGGCCAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCATGA 1413 0.4621 MHEIRDPAIRLFGQKIPFPEDVDIEEEEEEEDESGDGKEEEKEEDKDAGVENVTEEDLEADPSPSAGETKDSGTSPEAIVNPKTPSIEEETAKSKADKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDSPNGTHLPPLKGNGRVLSFGLDAHAPICDSMASVLNLGEKKVPDSTTNGFQHGFEDQRLPIPRKSGENGDDSSNTSSITVSNSMGESSKSTFQPQPVLQHHGFLPQLPCVPWPYTWNSPVPPPALCPSGYALSFYPPATFWNCGMPGNWNVPWFSSLSSASNPNSPGSAPNSPTLGKHSRDGDMIKQDSLHKEEASRPRNGGVLVPKTLRIDDPNEAAKSSIWATLGIKNESVSGAGMFKAFQSKKEEKNHVEASPVLMANPAALSRSLNFHENS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium164g00014 470 PANTHER CYCLIC DOF FACTOR 2 4 470 IPR045174 GO:0003700|GO:0006355
Vium164g00014 470 MobiDBLite consensus disorder prediction 21 40 - -
Vium164g00014 470 MobiDBLite consensus disorder prediction 354 377 - -
Vium164g00014 470 MobiDBLite consensus disorder prediction 241 289 - -
Vium164g00014 470 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
Vium164g00014 470 Coils Coil 24 44 - -
Vium164g00014 470 MobiDBLite consensus disorder prediction 262 289 - -
Vium164g00014 470 MobiDBLite consensus disorder prediction 67 81 - -
Vium164g00014 470 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
Vium164g00014 470 MobiDBLite consensus disorder prediction 88 119 - -
Vium164g00014 470 MobiDBLite consensus disorder prediction 1 119 - -
Vium164g00014 470 MobiDBLite consensus disorder prediction 354 370 - -
Vium164g00014 470 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium164g00014 Vium-Chr164 108321 111547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium164g00014 1 468 C2C2-Dof Transcription Factor Family AT3G47500 48.780 7.81e-124 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium164g00014 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium164g00014 - - gmx:778113 776.933