Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14876g00001 ATGTCAGAGGTTAAAGGCTCTGCCATAAAACTCTTTGGAAGGACAATTTCTCTGCCACACAATGATTCTTCTGCACCTCCGACTCTCGCTTGTCCTTCCTCTTCCTCTTCTCCCCCGGAACTTACCTCTGCAACACAACAACACCAAGAAGACCAGGAACCACAGAGGAAAGAACTTACCTCACTCGAAGACGATGATGCCTCATCACATGAAACCACAGAGGATTTAAAATCTGCCGCTTCAGACGCACTCGAGAATCCTAAGACTCCCTCAGCGGAAACAGAGACATCACTGCAGAAATCTCCCGAAAACGAAGAACAGAGTGAGACAAGTGCTTCTGAAGAAAAAACACCAAAGAAACCTGACAACATACTTCCATGTCCGCGGTGCAATAGCATGGACACCAAATTCTGCTATTACAACAACTACAATGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCAGGAGGAACGATGAGGAATGTGCCCGTGGGTGCTGGTCGCAGAAAAAACAAGAACACTTCGGCTGCAGCTGTATCACATTACCGACAGATAATGATGCCGGAGGCATTTCAGGGAGCTACACTGAATGCCTCCAATGGATTGCATAATGCCCTTTTTGGGAATGGGTCAGCTGTGTTGACTTTTGGTTCTGATACCCCTCTCTGTGACACCATGAGTTCTGTGTTGAACATTGCTGAGCGAGCCCAAAGTTGTGTATCAAATGGGTTTCATGCAACTGAGCCAAGTGGTTATTTTTCCTATAGTAAGGAGGGTGATGGGGGTGGTCATTCTACTGGAGTTTCTGTTTCAACAACTTCAAATTCCAGCCATGCTAGCTCACATGAATCGGTTGATAAAAGAGTTGAAGGTTTCACTCCTCAGTTATCATACTTCCCAGGTGCCCCTTGGCCTTATCCTATGCCTCCTACATTTTTCCAACCTAGGTACCCTTTATCATTCCACACTACACCAGCCTATTGGAGTTGTATGCCACCCTCTTGGAATATCTCATGTATGTCATCCCAATCTTCTGATAGCAACACTGTCTCTGCCCCCATTTTGGGGAAACACTCAAGGAATGGGAACATCATCACCCCATCGAATTCACAGAAAGAAATACATAACAGTTCAGAGCACAATTTCTTGATTCCCAAGACTCTTAGAATCGATGACCCTGGTGAAGCTGCAAAGAGTTCCATGTGGTCAAAACTAGGAACCAAGAATGACAGGACCAGCTCTGGAGGCCTTTTCCAAGCTTTTCCACCCAAGGGAAATGACATGAATCACAGGGTTGAAGCATCACCACAGTTTCAAGCCAACCCTGCAGCTCTATCGCGCTCTCTTACCTTCCATGAACAGACCTGA 1386 0.4618 MSEVKGSAIKLFGRTISLPHNDSSAPPTLACPSSSSSPPELTSATQQHQEDQEPQRKELTSLEDDDASSHETTEDLKSAASDALENPKTPSAETETSLQKSPENEEQSETSASEEKTPKKPDNILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTSAAAVSHYRQIMMPEAFQGATLNASNGLHNALFGNGSAVLTFGSDTPLCDTMSSVLNIAERAQSCVSNGFHATEPSGYFSYSKEGDGGGHSTGVSVSTTSNSSHASSHESVDKRVEGFTPQLSYFPGAPWPYPMPPTFFQPRYPLSFHTTPAYWSCMPPSWNISCMSSQSSDSNTVSAPILGKHSRNGNIITPSNSQKEIHNSSEHNFLIPKTLRIDDPGEAAKSSMWSKLGTKNDRTSSGGLFQAFPPKGNDMNHRVEASPQFQANPAALSRSLTFHEQT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14876g00001 461 MobiDBLite consensus disorder prediction 438 461 - -
Vium14876g00001 461 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Vium14876g00001 461 MobiDBLite consensus disorder prediction 271 286 - -
Vium14876g00001 461 MobiDBLite consensus disorder prediction 405 461 - -
Vium14876g00001 461 MobiDBLite consensus disorder prediction 17 126 - -
Vium14876g00001 461 MobiDBLite consensus disorder prediction 408 422 - -
Vium14876g00001 461 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
Vium14876g00001 461 MobiDBLite consensus disorder prediction 17 49 - -
Vium14876g00001 461 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Vium14876g00001 461 PANTHER CYCLIC DOF FACTOR 2 1 460 IPR045174 GO:0003700|GO:0006355
Vium14876g00001 461 MobiDBLite consensus disorder prediction 50 78 - -
Vium14876g00001 461 MobiDBLite consensus disorder prediction 99 122 - -
Vium14876g00001 461 MobiDBLite consensus disorder prediction 261 291 - -
Vium14876g00001 461 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14876g00001 Vium-Chr14876 3864 7696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14876g00001 8 459 C2C2-Dof Transcription Factor Family AT5G39660 38.400 4.33e-80 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium14876g00001 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14876g00001 - - gmx:100813315 648.662