Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12581g00015 ATGCCAAATCAACACCCCATTTGGCATTGTACTTTCCTCATGTTTCTCTTGTACTTTATACTCAATGCAGCTCCTGTGAGTTGCAAATCCACCATTGAGCCATGCTCTGATAGTAACTCCTGCAATGCTCTTCTTGGCTACACCCTTTACACTGAGCTCAAGGTCTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATTGCTCTTCTCACTGCCAATGCCTTTGACATAACCTTCTCTGATGTAGAGCATCACATTCTCCCTTGCAAACTCTTCCTCAAGGTCCCTATCACATGTTCCTGTGCTGATGGAATTAGAAAATCAGTGTCTGCCCATTACAGGACTCGTCCTTCTGATACTCTCTCTTCCATTGCAGATTCAGTGTATGGAGGTCTGGTGTCTCCTGATCAGCTTAGGGAGGCTAATTCCATAGCTGATCCTTTGATGCTTGATGTGGGTCACAACCTTGTGGTGCCACTTCCATGCACATGCTTCAATGGCAGTGATAATTCTTTGCCTTCAGTTTACCTCTCCTATGTGGTAAAGCCAATGGATACTTTGGCTGCCATTGCAGCTAGGTATTTCACCACACTTACTGATTTGATGAATGTCAATGACATGGGGAGTGCAGCTATCTCTGATGGAGATATTCTTGCTGTTCCAATTCCTGCTTGTGCATCAAAATTTCCAAAATATGCCACTGATTTTGGCTTGCTTGTCCCTAATGGAAGCTACACCATTACAGCTAGTCACTGTGTGCAGTGTAGCTGTGGACCACAGAATTTAGATTTATACTGTATTCCCTCTTCTCTAGCCGTCTCTTGCTCCAGCATGCAATGCAAAAGAAGCAATTTTACACTTGGGAATGTTACCGTGCAAAAGATGAGCTCAGGTTGTAATGTGACATCGTGCAATTATGATGGTTTTGTCAATGGCAACATATTAACAATGATGGCCTCATCTCTTCAGCCTCATTGTCCAGACCAACAACGATTCCCTCCACTTAGAGCGACACCTTCATCTCGTACAAGTGAATCAGTTGTTGCATTTCCTCCATCTCTGTCACCGTCACAGCCACCATTACTGTCACAATCACCATCATCGCCATCAGAAGGAATAGGTCTAATAGCACCCAAATCTTCAGTCATGCCTGCAACCAGATCATTTCCAGTATTCTCTCCTGGAAATGACCCTGTTGGTAGGATTGCTTCTGCTGCTTCCTCTTTGGTGAATCCTATTCCCATTTTGACGTCCTCATTTATGTTGTTGCTTATAACGTTGATGATCCCTGTTGCTTTGTAA 1302 0.4393 MPNQHPIWHCTFLMFLLYFILNAAPVSCKSTIEPCSDSNSCNALLGYTLYTELKVSEVASLFQIDPIALLTANAFDITFSDVEHHILPCKLFLKVPITCSCADGIRKSVSAHYRTRPSDTLSSIADSVYGGLVSPDQLREANSIADPLMLDVGHNLVVPLPCTCFNGSDNSLPSVYLSYVVKPMDTLAAIAARYFTTLTDLMNVNDMGSAAISDGDILAVPIPACASKFPKYATDFGLLVPNGSYTITASHCVQCSCGPQNLDLYCIPSSLAVSCSSMQCKRSNFTLGNVTVQKMSSGCNVTSCNYDGFVNGNILTMMASSLQPHCPDQQRFPPLRATPSSRTSESVVAFPPSLSPSQPPLLSQSPSSPSEGIGLIAPKSSVMPATRSFPVFSPGNDPVGRIASAASSLVNPIPILTSSFMLLLITLMIPVAL 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12581g00015 433 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 330 - -
Vium12581g00015 433 CDD LysM 178 220 IPR018392 -
Vium12581g00015 433 Gene3D LysM domain 109 167 IPR036779 -
Vium12581g00015 433 MobiDBLite consensus disorder prediction 346 370 - -
Vium12581g00015 433 SMART LysM_2 112 159 IPR018392 -
Vium12581g00015 433 SMART LysM_2 178 221 IPR018392 -
Vium12581g00015 433 SUPERFAMILY LysM domain 177 222 IPR036779 -
Vium12581g00015 433 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Vium12581g00015 433 Gene3D LysM domain 168 228 IPR036779 -
Vium12581g00015 433 CDD LysM 112 158 IPR018392 -
Vium12581g00015 433 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Vium12581g00015 433 Pfam LysM domain 113 159 IPR018392 -
Vium12581g00015 433 Pfam LysM domain 179 221 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12581g00015 Vium-Chr12581 158828 161195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12581g00015 12 432 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 58.824 7.27e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12581g00015 - - pvu:PHAVU_008G163700g 736.102