Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1159g00089 ATGTTCCAGTGGTCATTTAGGACATTGGAGTTCAGTTTTATGTGTCCAGTGATTAGTGGTGACCAAGTTAGCCTACACTTTTTAAGTTCAAATTTGTACCCTTTTAACCAATCCAAGAGATTTTTTTATATAATAAAGAATCTTGTGATTAATGGTCATGAGTTGAACTGCAGTTCGGATTTAGAAGTTGATGATATTAGATGCCCCAATATAGCAGAGAAAGATGTCAGTGATGAAGAGATTGAAGCAGAAGAATTGGAGCGGCGGATGTGGAAGGATCGAATCAAACTCAAAAGGCTAAAGGAAAGACAGAAGCTGGCGATTCAGCAAGCTGCAGAGAAGCAAAAGCCAAGGCAGTCCAGTGATCAAGCTCGTAGGAAGAAAATGTCAAGAGCACAGGATGGGATTCTGAAGTATATGCTGAAGCTTATGGAAGTCTGCAAAGCTCGTGGATTTGTATACGGGATCATTCCTGAGAAGGGAAAGCCGGTTAGTGGTTCCTCTGATAACATTAGAGCATGGTGGAAGGAGAAGGTAAAGTTTGATAAGAATGGCCCTGCAGCTATAGCCAAGTATGAAGCTGAGTGTCTTGCTATGAGTGAGGCCGATAAAAGCCGAAACGGTAACTCGCAGAGCATTCTCCAAGACCTGCAAGATGCAACACTTGGATCACTTTTGTCTTCTTTGATGCAACATTGTGATCCTCCTCAGAGGAAGTATCCATTGGAAAAGGGTGTACCTCCACCATGGTGGCCAACTGGTAATGAAGATTGGTGGTCACAGTTGAATTTACCTCATGGGCAGAGTCCTCCTTATAAGAAGCCACATGATTTGAAGAAGATGTGGAAAGTGGGAGTGCTCACTGCTGTTATAAAGCACATGTCACCTAATATTGCAAAGATAAGGAGGCATGTTCGGCAGTCAAAATGCTTGCAGGACAAGATGACAGCAAAGGAAAGTGCAATTTGGTTGGGGGTATTAAGTCGAGAAGAAGCTCTCATTAGGCAGCCTAGTAGTGACAATGGTACATCTGGAGTAACTGGAATGCTACCTGGTGTTCCTGCTGAGAATAAGCAAGCTGCTACTAGTAGTGCAAGCAACTATGATGTCGATGGTACTGATGATGGCATTGGTTCTGTTTCGTCTAAAGAGGATAGGAGAATTCAGATTGTGGAAACTGAACCACCAGTTAACCCGCGCAGGGTTAGGAAGCATGTCCAAGATAGAGATCAATCTAAGCAGCGACCGAGAAAACTCCGAGTGACATCAAGGACTGTTGACAAACCACCAGCACAATCTGACAATGAAGTTTTACATGCTGAGCCAAGAAGTAAAGGGCTCAATATTAACCAGACAGGAGCAGAAGTAGTACGAATCCAGATTCATGGAAATGAACAGTCCAATGAGACAGATTCTGCTGCAAGGCCACTGGAAAAGGAGCTTGAGGTGCCTGCACAACTACCTGCACCCGAGTTTGATCATTACTCTTATCTACATACAAACAACTTAATTTCCACAGAAAGTATTTATACGAGTGGAAGGCCAATACACTATCCTGAGTTGCAAAACCCTGACATGCAGCATGAACCCACTTATAATCTTTATAATCCCGCAGCAGGGTATGATCCTGGTCATAGGCAGCAGCTACATCCTGGGAACAACAGTGAAGGAAGGCCAGAGATTGATGCAGTTCATGTACAGGCTGTGCATATGAAAGGGGATGAAATTACTGGAGGAGATCTGCAATATTTTGGTAAAGATGCATTTCAGAATGAGCTTGATAGACCTATTGATCACTCTTTCTTTGGATCACCGCTTAGTAGCATGTCATTAGATTTTGGAGGACTTAACAGTCCATTGCATTTAGATGATTTCTTGGGTGATGATGAAATGATACAGTACTTTGGAGCATAA 1914 0.4289 MFQWSFRTLEFSFMCPVISGDQVSLHFLSSNLYPFNQSKRFFYIIKNLVINGHELNCSSDLEVDDIRCPNIAEKDVSDEEIEAEELERRMWKDRIKLKRLKERQKLAIQQAAEKQKPRQSSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGSSDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMSEADKSRNGNSQSILQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPTGNEDWWSQLNLPHGQSPPYKKPHDLKKMWKVGVLTAVIKHMSPNIAKIRRHVRQSKCLQDKMTAKESAIWLGVLSREEALIRQPSSDNGTSGVTGMLPGVPAENKQAATSSASNYDVDGTDDGIGSVSSKEDRRIQIVETEPPVNPRRVRKHVQDRDQSKQRPRKLRVTSRTVDKPPAQSDNEVLHAEPRSKGLNINQTGAEVVRIQIHGNEQSNETDSAARPLEKELEVPAQLPAPEFDHYSYLHTNNLISTESIYTSGRPIHYPELQNPDMQHEPTYNLYNPAAGYDPGHRQQLHPGNNSEGRPEIDAVHVQAVHMKGDEITGGDLQYFGKDAFQNELDRPIDHSFFGSPLSSMSLDFGGLNSPLHLDDFLGDDEMIQYFGA 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1159g00089 637 Coils Coil 83 103 - -
Vium1159g00089 637 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 61 624 IPR006957 GO:0003700|GO:0005634
Vium1159g00089 637 FunFam Ethylene insensitive 3-like 1 118 196 - -
Vium1159g00089 637 SUPERFAMILY DNA-binding domain of EIN3-like 212 335 IPR023278 GO:0003700|GO:0005634
Vium1159g00089 637 Gene3D - 203 342 IPR023278 GO:0003700|GO:0005634
Vium1159g00089 637 Gene3D - 118 194 IPR023278 GO:0003700|GO:0005634
Vium1159g00089 637 Pfam Ethylene insensitive 3 84 331 IPR047091 GO:0003700
Vium1159g00089 637 FunFam Ethylene insensitive 3-like 1 205 341 - -
Vium1159g00089 637 MobiDBLite consensus disorder prediction 378 424 - -
Vium1159g00089 637 MobiDBLite consensus disorder prediction 108 128 - -
Vium1159g00089 637 MobiDBLite consensus disorder prediction 335 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1159g00089 Vium-Chr1159 437817 440627 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1159g00089 62 637 EIL Transcription Factor Family AT1G73730 53.794 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Vium1159g00089 EIN3 8.6e-127 No_clan