Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium10480g00002 ATGATGGAGAGTGGATGGAAGGCTGAGGTTGAGATATCACCAAATTGTCCAAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAATAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAAGGGTGCAGAAGGTACTGGACCAAAGGAGGCTCTCTTCGGAATGTGCCTGTTGGTGGTGGCTGCAGGAAGAACAGAAGAGGTAACAAGACCTTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAACTTCATCATCATCACCTTGTGGGAATGCTACATATCATAATAATAACCCTGTTGGGCATTCTTATGATCCCAGAATAAGGACTTCTGCAGCTTCTAGCTCCTCATCAGGGATGAGTGATGTACCAAATATTGATCTTTCACTAGTTTATGCAAATTTCCTCAACCAAAACCCCATTTTTGAATCTGGGATTGAGAGCAGTAATCCAGATCAAGTTTGA 471 0.4225 MMESGWKAEVEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNKTLLRQSIDGFTFKTSSSSPCGNATYHNNNPVGHSYDPRIRTSAASSSSSGMSDVPNIDLSLVYANFLNQNPIFESGIESSNPDQV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium10480g00002 156 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 141 IPR045174 GO:0003700|GO:0006355
Vium10480g00002 156 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Vium10480g00002 156 MobiDBLite consensus disorder prediction 92 123 - -
Vium10480g00002 156 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Vium10480g00002 156 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium10480g00002 Vium-Chr10480 36485 37705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium10480g00002 8 142 C2C2-Dof Transcription Factor Family AT3G52440 58.519 1.71e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium10480g00002 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium10480g00002 - - vum:124819821 322.398