Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00073 ATGGATGGGATGGCTCCAAATTCATGTGCAAGGCCAGGTTTAGAGAAGAAAGCAAGACCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACTAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAACCAAGATACTTCTGTAAGACTTGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCGGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTCACTTCAGGAGGAGCAGGAGCTTCAGCTTCATCATCATCATCATCATCATCAAAGATTCCTGACCTAAATCCCCCAAACCTCTCTTCACAAAACCCTAAAATATTACATGGTGGCCAGGATCTCAACCTGGCTTTCCCAGCTATGGACAAGTATCATCATCATCATCATCATCATCATCATCATGGCATCTCCCCTTATGTCGAGATGCAAAACAGTGACACCACCACTCATCATCACCAAAACTCTCCTTCTTGTTCTGCTGCTCCAACCTCTCTTTCGGCTCTTGAGCTGCTAAGGTCCAGCATGGCATCTAGGGGTTTGAACCCTTATGCTCCTTCTTCCTTGATGCCAAATTCAGCAAACAACAATGCCCTTTACCCATCAGGGTTTCCCATGCAAGAAGTCAAACCAAGCCTCAGCTTTTCCTCAGTTGATGGGATGGGAAATAGATCATACGATCATCAGGTCCAAGAGACGGGTGGCAGAGTTTTGTTCCCTTTTGGAGATGTCAATAAGCAGCTTTCTGCTGCAGGATCAGCTGAAGTGGAACACAGTAAAGAACAACAGCAGCAGCAAGGAAACTCAACTGGATATTGGACTGGAATGATTGGTGAAGGGACATGGTAA 864 0.4514 MDGMAPNSCARPGLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVTSGGAGASASSSSSSSSKIPDLNPPNLSSQNPKILHGGQDLNLAFPAMDKYHHHHHHHHHHGISPYVEMQNSDTTTHHHQNSPSCSAAPTSLSALELLRSSMASRGLNPYAPSSLMPNSANNNALYPSGFPMQEVKPSLSFSSVDGMGNRSYDHQVQETGGRVLFPFGDVNKQLSAAGSAEVEHSKEQQQQQGNSTGYWTGMIGEGTW 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00073 287 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Vimu9g00073 287 MobiDBLite consensus disorder prediction 256 287 - -
Vimu9g00073 287 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Vimu9g00073 287 MobiDBLite consensus disorder prediction 80 114 - -
Vimu9g00073 287 MobiDBLite consensus disorder prediction 1 22 - -
Vimu9g00073 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 189 IPR045174 GO:0003700|GO:0006355
Vimu9g00073 287 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Vimu9g00073 287 MobiDBLite consensus disorder prediction 261 281 - -
Vimu9g00073 287 MobiDBLite consensus disorder prediction 65 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00073 Vimu-Chr9 867878 868741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00073 16 287 C2C2-Dof Transcription Factor Family AT3G61850 48.639 2.12e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu9g00073 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00073 - - gmx:778110 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00073 9 867878 868741 Vimu9g00073 9 867878 868741 ECH
Vimu2g01522 2 10548126 10551046 Vimu9g00073 9 867878 868741 PCT