Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01637 ATGGAGGAATTGGATTCAATACCAAAGACTCTGATGGAAAATCTGCTTGGTCTTTTGAGGGTTCGCGTGAAGCGTGGTATCAACCTTGCCGTTCGTGATGTCCGAAGTAGCGACCCTTATGTTGTCATCAAGATGTTCAATCAGAAACTAAAGACTCGTGTAATTAAAAAGGATGTGAATCCGGAGTGGAATGAAGACCTTACACTTTCTATTATAGATCCGAATCACCAAGTTAAACTGACTGTGTATGATCATGACACCTTCAGCAAAGATGACAGAATGGGAGATGCAGAATTTGACATCTTTCCCTTTATAGAAGCCTTGAAGAGCAACTTAACTGGCATTCCAAATGGTACTGTAATAAAAAGAATACAACCAAGCAGGGAGAACTTCCTGGCTGATGAGAGCTGCATCACTTATGCCAATGGCAAGCTTGTGCAAGATATGATCCTTAGATTGCAGAATGTGGAATGCGGTGAAGTGGAAATTCAGTTGCAGTGGATTGATCTTCCTGGTGCTAAGGGTATAGCTAAGGGCACATGA 543 0.4199 MEELDSIPKTLMENLLGLLRVRVKRGINLAVRDVRSSDPYVVIKMFNQKLKTRVIKKDVNPEWNEDLTLSIIDPNHQVKLTVYDHDTFSKDDRMGDAEFDIFPFIEALKSNLTGIPNGTVIKRIQPSRENFLADESCITYANGKLVQDMILRLQNVECGEVEIQLQWIDLPGAKGIAKGT 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01637 180 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
Vimu8g01637 180 Gene3D C2 domain 13 175 IPR035892 -
Vimu8g01637 180 SMART C2_3c 18 113 IPR000008 -
Vimu8g01637 180 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 102 IPR035892 -
Vimu8g01637 180 Pfam C2 domain 17 101 IPR000008 -
Vimu8g01637 180 CDD C2_ArfGAP 16 159 - -
Vimu8g01637 180 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 14 174 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01637 Vimu-Chr8 22217366 22219490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01637 49 178 C2H2 Transcription Factor Family AT1G70790 59.091 4.08e-53 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01856 6 16746894 16748803 Vimu8g01637 8 22217366 22219490 ECH
Vimu11g02633 11 46729726 46731103 Vimu8g01637 8 22217366 22219490 ECH
Vimu7g04199 7 40664345 40669835 Vimu8g01637 8 22217366 22219490 ECH
Vimu8g01637 8 22217366 22219490 Vimu8g01637 8 22217366 22219490 ECH
Vimu11g04930 11 68800454 68801145 Vimu8g01637 8 22217366 22219490 PCT