Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01582 ATGGATCCTCCACCTCTCTCTGCCGCAACCATCACCACTACCACCACTCATAAAAATCATCCTGATTCCATAGAGTCTTCTTCTCCGCGTTGCCGCAATGCAGAAATATGGAGTGATGAGAATTTACCGGCCGTTCCTGGGGCCAAGCTGCGCCTCATGTGCAGCTATGGTGGCCACATCATGCCACGCCCTCATGACAAGACTCTCTGCTACGTCGGCGGTGACACAAGGATTGTGGTGGTGGACCGTCACTCTTCGTTGAAAGATCTGTGTGCACGGCTTTCCCGAACCATTCTCCATGGAAGACCCTTCACACTCAAGTACCAGCTTCCCAATGAAGATCTTGATAGCCTCATCACTGTCACCACTGATGAAGATCTTGACAACATGGTGGAAGAGTATGATCGAATTACAGCGAAAGGTGCGGCTTCTTCACGCCTCAGGGTGTTCCTGTTCTTCACCAAACCTGAGGCCTCAGTTTCAATGGGGTCACTACTTGATGATGTGAAGTCAGAGACATGGTTTGTTGATGCACTCAACAACTCTGGAATGTTAAACAGAGTAGTTTCTGATACTGCTGCAGGGGATTCTTTTGTGAACCTTGACGGTGGTGGTGGTGTTAGTGCTAGTGGTTCAAGCAACAACTTGGAGGCTTTGCCTGATACTAACAATAGCAAGGCCAAGAACTTGCCTGATGTGGTGCAATCAAGTCCTGGTTCACCTATGATGGAGAACAGTTCCTCTTCTTCTCCTTCTTTCTCTCCTTCTCTGGCAAATCTGCCTCCAATTCGGGTACGTGTTGATGACAACAGTAGTAGGCTTCAACAAGAGAACAAGGTTGGGGGGCTGGTAGAGGAGCAGGCTCAGATGACAATTGCAAGTGGGGTGAAGCAAGATGATGGGTTGGTGAGTGTGGTTTCTTCTGCAGTGGCTGCACCTGCAATTCCTGCAGCTGTGAGTATGCCATCTGTTGGGGTGGTTACTACCAGTGATAATGTGATGAACAGAGTTGTTTCTGAGGACGAGAGATCTGATCTCGGGTTTCGGAAGCCCCCTTTACCATTGCAGCTTGTGCAGCCAAGGACTAGTGGTGGTTTGAATTTGCCTTCTCCTGATTCAGTTACAAGTGATAGCAGTATTGCATCTGCAAATTCTTTCTCCAAGACTGTTTACTATCAAGACCAAGTCCAAGCTGCACAACTAGACAACAAACTACTTGCTTTACCAAATGGCAAGAGTGAAATATCTGATCAGGTGATTCAGGTCCATGGTCAAGTTCAGGATTCTGGCTACACATTACCCCCACAATTAGATCAAAATAGGCAACTTCAGCAGCAAAAGCCCTTGGTCCATGCCAGCTCTCACTACATCCACCACCCTGCAGCCACAGGGCAAATACCAGTTTCCTCATACTACCCAGTTTATGCCCCACCACCACAACAACAACTTCACCCTCCAATTGGTCAGCAACAGTACCCAGTTTATGTGATGCCTGTTGGACCCACACAAGTAACACAACCATACAATATGGCCTTGCAGCACAACATGGGTGACCCAAATGTGTTACTCTCAGGCAGAACCCTAATACCACAGAGTGCTGTTACCTCAGCAGCATACAAGGATGGTACTCCACCTATCTATCCCACCAAATCAGTTAGCCCTACTATACCTGAGGTGACTCCAAGTGTTTACAAGGCTCCTCCTCCTGTGGCCTCAAACCCTGCATATGCTCCCATACCTCCCAACCAATTTCAACCACAGTATGTGGGGTTGTCTCAGTTCCATCATCCACCACAGTCCATTGCTGTGGCTCCCTCTAGTACTACTACTAATTATGGTTATGAATATGGTGGCCATGTGCAAGACCAAGCATACTACACCCAACAGCAAACCACTACAGCTCCATTGCTTCCTCAATACCAATCCATGACCCCAGCTGCAGCAGCTGCAGCATTGTCAGATGCTTCAAAACAGTTTCCTGCAGACACCATTCAGCAGCAAAATAGAGCATCACAGCCAGTATGA 2025 0.4805 MDPPPLSAATITTTTTHKNHPDSIESSSPRCRNAEIWSDENLPAVPGAKLRLMCSYGGHIMPRPHDKTLCYVGGDTRIVVVDRHSSLKDLCARLSRTILHGRPFTLKYQLPNEDLDSLITVTTDEDLDNMVEEYDRITAKGAASSRLRVFLFFTKPEASVSMGSLLDDVKSETWFVDALNNSGMLNRVVSDTAAGDSFVNLDGGGGVSASGSSNNLEALPDTNNSKAKNLPDVVQSSPGSPMMENSSSSSPSFSPSLANLPPIRVRVDDNSSRLQQENKVGGLVEEQAQMTIASGVKQDDGLVSVVSSAVAAPAIPAAVSMPSVGVVTTSDNVMNRVVSEDERSDLGFRKPPLPLQLVQPRTSGGLNLPSPDSVTSDSSIASANSFSKTVYYQDQVQAAQLDNKLLALPNGKSEISDQVIQVHGQVQDSGYTLPPQLDQNRQLQQQKPLVHASSHYIHHPAATGQIPVSSYYPVYAPPPQQQLHPPIGQQQYPVYVMPVGPTQVTQPYNMALQHNMGDPNVLLSGRTLIPQSAVTSAAYKDGTPPIYPTKSVSPTIPEVTPSVYKAPPPVASNPAYAPIPPNQFQPQYVGLSQFHHPPQSIAVAPSSTTTNYGYEYGGHVQDQAYYTQQQTTTAPLLPQYQSMTPAAAAAALSDASKQFPADTIQQQNRASQPV 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01582 674 MobiDBLite consensus disorder prediction 654 674 - -
Vimu8g01582 674 MobiDBLite consensus disorder prediction 211 260 - -
Vimu8g01582 674 Pfam PB1 domain 66 152 IPR000270 GO:0005515
Vimu8g01582 674 ProSiteProfiles PB1 domain profile. 49 152 IPR000270 GO:0005515
Vimu8g01582 674 Gene3D - 67 153 - -
Vimu8g01582 674 MobiDBLite consensus disorder prediction 658 674 - -
Vimu8g01582 674 PANTHER OS05G0427100 PROTEIN-RELATED 21 502 - -
Vimu8g01582 674 SMART PB1_new 64 154 IPR000270 GO:0005515
Vimu8g01582 674 SUPERFAMILY CAD & PB1 domains 65 162 - -
Vimu8g01582 674 CDD PB1_UP2 53 152 - -
Vimu8g01582 674 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 69 154 - -
Vimu8g01582 674 MobiDBLite consensus disorder prediction 1 30 - -
Vimu8g01582 674 MobiDBLite consensus disorder prediction 211 257 - -
Vimu8g01582 674 MobiDBLite consensus disorder prediction 7 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01582 Vimu-Chr8 21723889 21726090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01582 48 229 MAP Kinase Kinase Kinase AT1G16270 37.363 6.49e-27 115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03509 3 47979582 47981912 Vimu8g01582 8 21723889 21726090 ECH
Vimu8g01582 8 21723889 21726090 Vimu8g01582 8 21723889 21726090 ECH