Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g00585 ATGTCTAATAAGGATCCGGGTATTAGGCTCTTTGGCAGGAAGATTCCGTTGCCGGAATCTCAGATTCCGGCCAGTTCTCAGATGGGATATCAGATTCAGGCCAACTCTGCAACCATGAATGCTTACAATGGCTTAAAGAAAAAAGAAGTTGAGATGCCCTGTACTGAAAACTCTGAGCAACCAGAGAATTATTCTGATTCAACGGATAGAAAACAAGAGACACTACATAATGATCGGCAGGAAAATGAGTCAAAAGGAAATTCCAAAACAGTGGAAAATAATACCGAGAGTAGCAGTACAGATCAAGATAAAATCTTCAAGAAACCAGACAAGATTCTGCATTGTCCTCGATGCAACAGTTTAGACACCAAATTCTGTTATTTCAATAACTACAATGTGAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCAGGTGGAACCATGAGAAATGTTCCAGTGGGTGCGGGGAGACGAAAGAACAAGCAGCTAGCTTCTCAATACCGGCACATTATTGTATCTTGTGACGGAATTCCAACTACAAGTGACTCTTCTTGTCACCAACTTGCCACAACACTTCAATCTGCTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTATTGAAATTTTGTCCGGATGCCCCTCCTCTTTGTGAATCCATGGAATCAATGCTTAATCTTAAAGAACAAAATCGAAGTGCTGATGAAAATACCGTCAATTATGCAGAAAAAGGGGAGGAGGAAGTATCCTTATGTGGATCATCATCTATGACCAATGCTTGCACTCCAAGAAACAAATCAACTGAACCAACTGCATCAAAACCTATGCAGTGTTATCCTGTTCCTCCGTGGATATTCCCTTGGAATCCAGATTGGAACAATGTTGCTTCCACTGCATCAGTTCACCCCTCTTCACTACAAATGCGTAACCCTTATAACAGTGCCGACCCTGCTTCAATGCAGTGGTGTCCTACACCGATCATGGCAGTTCCAACAATCTGCCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGAGTGGACCACCTGTGTATGGTGGTGGAACAGGAGCTGCTTCAATGGGTTTCAATGCCTGCCTTTCACCTACTTCCTCTACCAGTAATAGCTGCTGCTCAGGCAACGGCTCCCCAACACTTGGCAAACACACAAGAGACAACCTTTCAACAGATGAAGAAAAATCAGACATGTGTGTCTTGGTTCCAACGACCCTTAGAATTGATGATCCAAATGGGGCCTCAAAATTGGTCTCATCAGGAACCAACCTTGAATCTGTACCAGAAGGTACTATTTCAAAAAGGGCAAAGCCTAGAGAAGGCAAAGACCGTGTCTTGGGTGTGTCTCAAATCTTGGAAGCTAACCCTGCAGCTATTTCTCGTGCTCATGCATTTCAAGAGGGCATGTGA 1446 0.4364 MSNKDPGIRLFGRKIPLPESQIPASSQMGYQIQANSATMNAYNGLKKKEVEMPCTENSEQPENYSDSTDRKQETLHNDRQENESKGNSKTVENNTESSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKQLASQYRHIIVSCDGIPTTSDSSCHQLATTLQSAAVFRSSTDNGTVLKFCPDAPPLCESMESMLNLKEQNRSADENTVNYAEKGEEEVSLCGSSSMTNACTPRNKSTEPTASKPMQCYPVPPWIFPWNPDWNNVASTASVHPSSLQMRNPYNSADPASMQWCPTPIMAVPTICPPSFPLQFVPGSYWSGPPVYGGGTGAASMGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDNLSTDEEKSDMCVLVPTTLRIDDPNGASKLVSSGTNLESVPEGTISKRAKPREGKDRVLGVSQILEANPAAISRAHAFQEGM 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g00585 481 PANTHER CYCLIC DOF FACTOR 2 3 480 IPR045174 GO:0003700|GO:0006355
Vimu8g00585 481 ProSitePatterns Zinc finger Dof-type signature. 115 151 IPR003851 GO:0003677|GO:0006355
Vimu8g00585 481 MobiDBLite consensus disorder prediction 50 105 - -
Vimu8g00585 481 ProSiteProfiles Zinc finger Dof-type profile. 113 167 IPR003851 GO:0003677|GO:0006355
Vimu8g00585 481 MobiDBLite consensus disorder prediction 424 453 - -
Vimu8g00585 481 Pfam Dof domain, zinc finger 110 167 IPR003851 GO:0003677|GO:0006355
Vimu8g00585 481 MobiDBLite consensus disorder prediction 427 441 - -
Vimu8g00585 481 MobiDBLite consensus disorder prediction 384 407 - -
Vimu8g00585 481 MobiDBLite consensus disorder prediction 63 86 - -
Vimu8g00585 481 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g00585 Vimu-Chr8 12303542 12306107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g00585 5 479 C2C2-Dof Transcription Factor Family AT5G39660 32.890 1.08e-60 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu8g00585 zf-Dof 6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g00585 - - ccaj:109792807 756.133