Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04245 ATGTCCATTGCTGATGAGCCGCTATATCCCATAGCAGTGCTTATAGACGAACTGAAAAATGATGACATTCAGCTGCGATTGAACTCGATACGGAAGTTATCTACGATTGCCCGGGCTCTTGGGGAGGAGCGAACGCGTAGGGAGTTGATACCCTTTTTGGGTGAGAATAATGATGATGATGATGAGGTACTTCTTGCAATGGCTGAAGAGTTGGGCGTGTTTGTTCCTTTTGTCGGCGGAGTGGAACATGCTCATGTGTTGCTCCCACCTTTGGAGACGCTTTGCACTGTTGAGGAAACTTGTGTGAGAGATAAAGCTGTGGAATCACTTTGTAGGATTGGATCACAAATGAGGGAAAGTGATTTGGTTGAATATTTCATTCCTTTGGTGAAGAGGTTGGCAGCAGGTGAATGGTTCACTGCTCGAGTGTCTTCATGTGGGCTATTTCACATTGCTTACCCTAGTGCACCGGAAATGTCAAAGACAGAGTTAAGATCAATATACAATCTGTTGTGTCAAGATGACATGCCTATGGTTAGAAGATCTGCTGCATCAAATCTTGGAAAGTTTGCTGCAACTGTTGAATACACTCATTTGAAGGCTGACACTATGTCAATTTTTGAGGATCTCACTAAGGATGATCAAGATTCTGTTAGATTGTTGGCTGTGGAGGGTTGTGCTGTACTTGGGAAGCTGCTGGAGCCACAAGATTGTGTCGCACATATACTACCGGTTATTGTCAACTTCTCACAGGATAAGTCGTGGCGTGTGCGATACATGGTTGGAAATCAATTGTATGAGCTTTGTGAAGCTGTAGGCCCTGAACCTACCAGAACGGAATTGGTCCCTGCCTATGTGCGGTTGCTTCGAGACAATGAAGCTGAAGTACGGATTGCAGCTGCAGGGAAAGTGACCAAGTTTTGTAGGATTTTAAATCCGGATCTCTCAATTCAGCATATTCTTCCTTGTGTGAAGGAACTGTCATCGGATTCTTCACAGCATGTTCGCTCTGCTTTGGCTTCAGTGATAATGGGAATGGCTCCGGTGTTAGGAAAGGATGCAACAATTGAGCAACTTCTTCCTATTTTTCTTTCCCTTTTGAAGGACGAATTTCCTGATGTGCGCCTAAATATCATAAGCAAGCTTGATCAAGTGAATCAGGTCATTGGAATTGATTTATTATCTCAATCTTTGTTACCAGCCATTGTTGAGCTTGCTGAGGATAGGCATTGGAGGGTTCGACTTGCAATAATAGAATATATACCCTTATTGGCAAGTCAATTGGGTGTTGGTTTTTTTGATGATAAGCTTGGTGCTCTTTGCATGCAGTGGTTACAGGACAAGGTTCATTCAATCCGTGAGGCAGCAGCTAACAACTTGAAGCGCCTAGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAAAACATAATTCCACAGGTTCTGGATATGATTAGTAATCCGCATTATTTGTACCGAATGACCATACTTCAATCCATCTCTCTGCTTGCTCCTGTGATGGGACCTGAAATCACCTGTTCAACATTATTGCCTGTTGTTATTACTGCATCTAAAGACAGAGTACCCAACATTAAGTTCAATGTGGCAAAGGTCTTGGAATCAATCTTCCCCATAGTGGATCAATCTGTTGTGGAAAAGTCTATACGACCTAGTCTGGTTGAGCTCAGTGAGGATCCCGACGTTGATGTAAGATTTTTTTCCAATCAAGCACTTCAGGCTATTGATCATGTCATGATGTCTAGCTAG 1764 0.4325 MSIADEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRRELIPFLGENNDDDDEVLLAMAEELGVFVPFVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVEYFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPEMSKTELRSIYNLLCQDDMPMVRRSAASNLGKFAATVEYTHLKADTMSIFEDLTKDDQDSVRLLAVEGCAVLGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVGNQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPDLSIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQNIIPQVLDMISNPHYLYRMTILQSISLLAPVMGPEITCSTLLPVVITASKDRVPNIKFNVAKVLESIFPIVDQSVVEKSIRPSLVELSEDPDVDVRFFSNQALQAIDHVMMSS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04245 587 Gene3D - 3 583 IPR011989 -
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Vimu7g04245 587 Pfam HEAT repeats 361 461 - -
Vimu7g04245 587 SUPERFAMILY ARM repeat 8 580 IPR016024 -
Vimu7g04245 587 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 581 - -
Vimu7g04245 587 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 554 587 IPR021133 -
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 437 475 IPR021133 -
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 515 553 IPR021133 -
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Vimu7g04245 587 ProSiteProfiles HEAT repeat profile. 476 514 IPR021133 -
Vimu7g04245 587 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 5 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04245 Vimu-Chr7 41138228 41147445 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04245 7 41138228 41147445 Vimu7g04245 7 41138228 41147445 ECH