Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04199 ATGGAGAATGATGTGTTGGGTATTCTGAAACTTCGAATCATAAAAGGCATTGATCTTGCAATTCGTGATTCTCGTGCAAGTGATCCTTATGTCGTCGTCATAATGGGTGATCAGAAGCTGAAGACGCGTGTTATAAAAAACAACTGCAATCCTACGTGGGATGAAGAAATGACCCTTTACGTAAAGGATGTTAATACCCCATTACATCTGACAGTTTATGACAAAGACACATTTACTGTGGATGACAAAATGGGTGAGGCAGAAATAGACTTGATACCCTTTCTTAAGTGTAAGAAGATGGAATTGAAAAACCTTCCAAATGGTTGTGCAGTGAAGAGGATCCAACCAAATAGAAGTAATTACCTTGCTGAAGAGAGCAGTTGTGTTTGGAATGATGGTGATATTGTCCAAAAAATGATTTTGAGATTGAAAAATGTTGAGAGGGGTGAAGTCGTTGTGCAAATTCAGTGGGTTGATGTTGTTGGTTTCAAGGGCTTATCGCATATCAAACTTTGA 516 0.3857 MENDVLGILKLRIIKGIDLAIRDSRASDPYVVVIMGDQKLKTRVIKNNCNPTWDEEMTLYVKDVNTPLHLTVYDKDTFTVDDKMGEAEIDLIPFLKCKKMELKNLPNGCAVKRIQPNRSNYLAEESSCVWNDGDIVQKMILRLKNVERGEVVVQIQWVDVVGFKGLSHIKL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04199 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 162 IPR044562 -
Vimu7g04199 171 SMART C2_3c 8 103 IPR000008 -
Vimu7g04199 171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 96 IPR035892 -
Vimu7g04199 171 Pfam C2 domain 7 93 IPR000008 -
Vimu7g04199 171 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vimu7g04199 171 Gene3D C2 domain 3 163 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04199 Vimu-Chr7 40664345 40669835 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04199 39 168 C2H2 Transcription Factor Family AT1G70790 62.879 7.35e-57 173
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04199 7 40664345 40669835 Vimu7g04199 7 40664345 40669835 ECH
Vimu7g04199 7 40664345 40669835 Vimu8g01637 8 22217366 22219490 ECH
Vimu7g04199 7 40664345 40669835 Vimu6g01856 6 16746894 16748803 ECH