Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04110 ATGGCGTCCGAGAGCGCTTCTCGATCGAGTTCTGCGGCGGATACCTACATTGGGAGCTTGATAAGCCTCACTTCTAAGAGTGAAATCAGATACGAGGGCATTCTGTACAACATCAACACAGAAGAGTCCAGTATTGGCCTAAGAAATGGGAAGGATTTTTCTGAAGTTGTGATAGTTCATGGGTCTTCTGCTAAGAGATTGAGAATGGTCTTGATTGTTGTGGAAATCATGAGTGCTTTTGCAGACAAGCACAGCTCCTGGGAGTGCTGTATCACACCTCTTAGGCTATTTTTTGATTTGATTATGTTGCAAGCTATGTTTTGTATTGGAATTAGGTGGCGCTTTTGTTTTTGTGTTGCAGTGCGATCTTTTGGTACAGAGGGAAGGAAAAAGGACGGCCCGCAAATTCCCCTTGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGTACTGACATCAAGGATTTACAGGTTAAATCCTCTCCACCTGTGCAGCCTCCTCCACAAGTCAATAATGACCCAGCTATTATTCAGTCTCACTATCCTCATCCTGTCACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGCCTTTGACTGATCTTAACTCTCATACCCCTCAGCATGGACTTCCTGGGTCAAATTTTCAAGGACCCTTACCTTTGTATCAACCTGGAGGGAACATAGGATCATGGGGAGCTTCTCCGCCTGCTCCAAATGCAAATGGTGGTAGGCTTGCTATGCCGATGTATTGGCAAGGATATTATGGTACTCCCAATGGGCTTCCTCAATTGCAACAACAATCTTTGCTTCGACCTCCACCTGGTTTATCAATGCCTTCCTCCTTGCAGCAGCCTATGCAGTATCCCAGTTTTAGTCACTCTTTACCTACTGTATCTTCTAACTTACCAGAATTACCATCATCTTTACTACCTGTGAGTACTACTACTCCTGGTGTAACGTCTGCTTCCTTGCCTCCGTCTAATTTTGCCCCAGCACCTTCTGCTTTACCTCCTGCACCTTCTGCTTTACCTCCTGCACCTTCTGCATTGCCTCCTGCACCATCTGCTTTGCCTTCGGCTTTGCCTCCTGCACCTTCTGCAACGCTTGCTTCTGAAATTTTGCCAGCATCAGTAACAAACAAGATACCCAATGTTTCAACTTCAGCAACCATGTTAGCTGCTAGCTTACCATCACTGACTTCGCTGACTAATTCTGGTCCAGAAATAAATGCTATAGTGCCACCCATCAACAGCAAACCAAATGCAATTTCAGGTTCAAGCTTAGCCTATCAAACTGGATCACAGTTGTCTCCTGCAGTTATTGGATCATCAACTTCTATCCATACAGAAACATCAGCCCCTTCTCTGATTACCCCAGGTCAATTATTGCAGCCTGGACCATCAATAGTTACTTCAGCTCAGCCTTCACAAGCACCTCATAAGGATGTTGAAGTGGTTCAGGTATCATCAATGTCATCTTCTGAGTCATCTCTGCCAGTTTTTACTGATGTTCAACCACCAATACTGCCTTTGCCAGTAACTTCACGACCCAATCACAGGGGCCCAGTCACACAATTCACTGAAGATTTTGATTTCATGGCAATGAATGAGAAATTCAGAAAGGATGAAGTATGGGGTCATCTTGGTAAAAGCAAGTCTCACTCAAAAGACAAAGATGGTGAAGAGATAGGGTATGATGAAGATTACCAAGATGAAGAGAATAATGATTTATCGGACCTTGAGGTTAAGCCTATTTATAACAAGGATGACTTCTTTGACTCGCTCTCTTCCAACGTGCATGATAATACTTCACGAAATGGAAGGACTAGATACTCAGAACAAGTCAAGCTTGATACTGAGACGTTTGGGGATTTTGTGAGGTACCATGGAAGCCGAGGTGGCCGTGGCCCTGGTCGTGGTGGACGAATGCGTGGTGGTTATTATGGAAGAGGAGGAGGATATGGATATGGATATGGCTATTCTGGACGAGGCAGGGCTCGCGGTGGTGGTGGTGGTGGTGGCAGTGGTGGTGCCATGCCTGGTCGAGCTTTATAG 2058 0.4524 MASESASRSSSAADTYIGSLISLTSKSEIRYEGILYNINTEESSIGLRNGKDFSEVVIVHGSSAKRLRMVLIVVEIMSAFADKHSSWECCITPLRLFFDLIMLQAMFCIGIRWRFCFCVAVRSFGTEGRKKDGPQIPLGDKVYEYILFRGTDIKDLQVKSSPPVQPPPQVNNDPAIIQSHYPHPVTTSTSLPSAVSGPLTDLNSHTPQHGLPGSNFQGPLPLYQPGGNIGSWGASPPAPNANGGRLAMPMYWQGYYGTPNGLPQLQQQSLLRPPPGLSMPSSLQQPMQYPSFSHSLPTVSSNLPELPSSLLPVSTTTPGVTSASLPPSNFAPAPSALPPAPSALPPAPSALPPAPSALPSALPPAPSATLASEILPASVTNKIPNVSTSATMLAASLPSLTSLTNSGPEINAIVPPINSKPNAISGSSLAYQTGSQLSPAVIGSSTSIHTETSAPSLITPGQLLQPGPSIVTSAQPSQAPHKDVEVVQVSSMSSSESSLPVFTDVQPPILPLPVTSRPNHRGPVTQFTEDFDFMAMNEKFRKDEVWGHLGKSKSHSKDKDGEEIGYDEDYQDEENNDLSDLEVKPIYNKDDFFDSLSSNVHDNTSRNGRTRYSEQVKLDTETFGDFVRYHGSRGGRGPGRGGRMRGGYYGRGGGYGYGYGYSGRGRARGGGGGGGSGGAMPGRAL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04110 685 Pfam FDF domain 526 624 IPR019050 -
Vimu7g04110 685 MobiDBLite consensus disorder prediction 263 366 - -
Vimu7g04110 685 SMART FDF_2 525 627 IPR019050 -
Vimu7g04110 685 MobiDBLite consensus disorder prediction 331 362 - -
Vimu7g04110 685 MobiDBLite consensus disorder prediction 548 564 - -
Vimu7g04110 685 SUPERFAMILY Sm-like ribonucleoproteins 16 52 IPR010920 -
Vimu7g04110 685 ProSiteProfiles TFG box profile. 607 627 IPR025768 -
Vimu7g04110 685 Pfam Scd6-like Sm domain 16 160 IPR025609 -
Vimu7g04110 685 PANTHER SCD6 PROTEIN-RELATED 11 50 - -
Vimu7g04110 685 MobiDBLite consensus disorder prediction 281 329 - -
Vimu7g04110 685 CDD LSm14_N 14 158 IPR025609 -
Vimu7g04110 685 MobiDBLite consensus disorder prediction 594 615 - -
Vimu7g04110 685 Gene3D - 7 163 - -
Vimu7g04110 685 SUPERFAMILY Sm-like ribonucleoproteins 119 163 IPR010920 -
Vimu7g04110 685 ProSiteProfiles DFDF domain profile. 519 555 IPR025762 -
Vimu7g04110 685 MobiDBLite consensus disorder prediction 548 581 - -
Vimu7g04110 685 ProSiteProfiles FFD box profile. 585 600 IPR025761 -
Vimu7g04110 685 SMART LSM14_2 10 181 IPR025609 -
Vimu7g04110 685 MobiDBLite consensus disorder prediction 594 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04110 Vimu-Chr7 39608160 39613829 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04110 7 39608160 39613829 Vimu7g04110 7 39608160 39613829 ECH