Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04079 ATGTACTGTTTGTTGCTTCGTACCAACAACACATCCGCAGAGCCACTTTGTTTGCAAGAGAGAGAATCTACGAAAATTTTGGTGTGGTGTTGTGTGGCAGATCACGAATCCTCAGAAACTGCAATGGCTTTTATGTCGGAGGTCAACATGAGCTTCTCTCACTACATGGATGATGAATACGAGAAACTCTTCCGGAGAATGAACCCTCCCAGGGTTGTAATTGATAATGAATCCTGCAAGAATGCCACTGTTATACGGGTTGATAGTGCAAACAAGCATGGAATACTTCTTGAAGTTGTACAGATCCTCACTGATCTAAACCTCATCATAACCAAAGCTTACATATCTTCTGATGGTGGATGGTTCATGGATGTTTTTAATGTTACTGGACAAGATGGAAACAAGGTTACTGACGAGGCCATTTTGGATTACATTAGAAAGTCTCTCGGTCCCGAATCTTGTGTTACTTCTCCAATTAGATCTGTTGGGGTTGAGCAAACAATGGACCACACAGCAATTGAGCTTATGGGAAGTGATAGGCCAGGATTGCTTTCAGAAGTCAGTGCTGTTTTGACCAACCTCAAGTGCAATATAGTGAATGCAGAGGTGTGGACTCACAACACCCGGGCAGCCGCTGTAATGCACGTGACAGATGAAGAAACCGGATCAGCTATCACTGACCCTAAGAGGCTCTCTATGATCAAGGAACTTCTATGCAATGTGCTTGGTGGTGGCAACAAGAAGAGGGGAGCTAAAACTGTTGTCACAGATGAAGTCACACACACTGAGAGAAGGCTTCACCAAATGATGTTTGCTGATAGGGATTATGAACGAGATAATGATGATGGCTTTGATGAGAAGCAAAGACCAAATGTGAATGTTGTGAATTGGTCTGACAATGATTATTCAGTAGTAACTATTCAGTGTAAGGACAGGCCAAAGCTTCTCTTCGACACAGTTTGTACTTTGACAGACATGGAGTATGTGGTTTTTCATGCAAATATCGATGCTGAGGGGCCGGAAGCATATCAGGAATATTACATCAAGCATATTGACGGGTCCCCTGTGAAATCAGATGCAGAAAGACAAAGAGTTATACAATGTCTTGCAGCTGCAATTGAGAGAAGAGTTTCTGACGGTTTGAAGCTAGAACTCTGCACCACCGACAGAGTTGGACTTCTATCTGATGTCACGCGTATCTTCAGAGAGAATAGCCTCACAGTCACAAGGGCAGAAGTGTCCACAAAAGGAGGCAAAGCTGTTAACACTTTCTATGTTCGCGGGGCATCTGGTTTCCCTGTTGATTTGAAGACCATAGAATCCATTAGGCAAACAATAGGAAACACAATCCTTAAAGTAAAGGGTAGCCCTTCAGAGATGAAATCTGTTTCTCAGGATTCTCCCTCCAGATCCCTGTTTAGTGGTCTTTTCAAGTCCAGATCTTTTGTGAACTTTGGCTTGGTTAAGTCTTATTCTTGA 1479 0.43 MYCLLLRTNNTSAEPLCLQERESTKILVWCCVADHESSETAMAFMSEVNMSFSHYMDDEYEKLFRRMNPPRVVIDNESCKNATVIRVDSANKHGILLEVVQILTDLNLIITKAYISSDGGWFMDVFNVTGQDGNKVTDEAILDYIRKSLGPESCVTSPIRSVGVEQTMDHTAIELMGSDRPGLLSEVSAVLTNLKCNIVNAEVWTHNTRAAAVMHVTDEETGSAITDPKRLSMIKELLCNVLGGGNKKRGAKTVVTDEVTHTERRLHQMMFADRDYERDNDDGFDEKQRPNVNVVNWSDNDYSVVTIQCKDRPKLLFDTVCTLTDMEYVVFHANIDAEGPEAYQEYYIKHIDGSPVKSDAERQRVIQCLAAAIERRVSDGLKLELCTTDRVGLLSDVTRIFRENSLTVTRAEVSTKGGKAVNTFYVRGASGFPVDLKTIESIRQTIGNTILKVKGSPSEMKSVSQDSPSRSLFSGLFKSRSFVNFGLVKSYS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04079 492 ProSiteProfiles ACT domain profile. 84 163 IPR002912 -
Vimu7g04079 492 ProSiteProfiles ACT domain profile. 172 259 IPR002912 -
Vimu7g04079 492 Pfam ACT domain 173 223 IPR002912 -
Vimu7g04079 492 Pfam ACT domain 388 442 IPR002912 -
Vimu7g04079 492 Pfam ACT domain 83 143 IPR002912 -
Vimu7g04079 492 CDD ACT_ACR_4 380 447 - -
Vimu7g04079 492 CDD ACT_ACR_2 171 244 - -
Vimu7g04079 492 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 55 455 IPR040217 -
Vimu7g04079 492 SUPERFAMILY ACT-like 79 147 IPR045865 -
Vimu7g04079 492 ProSiteProfiles ACT domain profile. 382 458 IPR002912 -
Vimu7g04079 492 Gene3D - 381 454 - -
Vimu7g04079 492 Gene3D - 167 240 - -
Vimu7g04079 492 SUPERFAMILY ACT-like 167 238 IPR045865 -
Vimu7g04079 492 SUPERFAMILY ACT-like 378 447 IPR045865 -
Vimu7g04079 492 CDD ACT_ACR_3 302 376 - -
Vimu7g04079 492 CDD ACT_ACR_1 82 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04079 Vimu-Chr7 39024458 39027967 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04079 7 39024458 39027967 Vimu7g04079 7 39024458 39027967 ECH