Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04048 ATGTCTTCCAATAAGAACAAGGGAAAAACTGTTGGCGCAAAAACGGCAAGAGCATGCGATAGCTGCATAAGAAATCGAGCGAGTTGGTACTGTGCCGCGGACGACGCGTTCCTATGCCAAGCTTGTGACTCTTCCGTTCACTCAGCGAACCCATTAGCGCGTAGACATCACCGCGTTCGCTTGAAAATCATTTCGCGCATTAACTCGAGCAATGACTTATCTTCTGGAATGAGTAATATTCGTGTTCCATCGTGGCACAAAGGGTTCACAAAGAAACCCCGAACACCACGTCACAGGAGGCACACTAATAGGGGTGTCAAGAGCCCCTTCAATGTGGTACCGGAAGTGTGTCCCCAAGACACAATTTCGAATTCACATGAAGAGAGCACGGATATGCTTCTTTATAGAGTACCCGCAACTCCTTCATCTGAACAAGGGGTATCCATGACCGATGAGAGGAAAGTTTATTTGTTAGGAAGTGAAAGCGCTATTGAGATTGCGGAGTTTAGTGCTGATGTTGAGAGTTTGTTGGGGAAGGGACTAGAGAGTGAGTTTGTGGGAATGGAAGAGTTGGGGCTGGTGGGTGCCAAGGAGGTGGAGGAGCATGCTTCTTGGGAGAGTTGTGTGGATAACGAGAATGTTTCGTTGACATACGAAGAGGCGAAGGAAAAGGTTGTTCTGTTGGATAAGAACCAGCAAGTACTGAAGAAGAAGATACTATTGTTGCAGTTGGATTACGAGGCTGTAATCAGTGCTTGGACGAGCCAAAAATCCCCATGGACAACTGCTGATAAACCAGACTTGGGCACTCAGCAGTTTTGTTCTCATAGTATGGTAACATGTGGAGTCGAGTTTTACCATCCTCCTGGGGAATGGGGTGAATTATCTGGGTGTCATTCAACAATGGCTGACGATGGAAGAGAAGCAAGAGTATTGAGATATAGAGAAAAGCGACGTAAAAGGTTGTTCTCGAAAAAAGTAAGGTATGAGGTTCGAAAGATGAACGCGGAGAAAAGACCCAGAATGAAAGGGAGGTTTGTAAAGAGATCTTGTATACAGACACCAGACACTGTTCCCTTGTTAAAGATAAAATAA 1095 0.4557 MSSNKNKGKTVGAKTARACDSCIRNRASWYCAADDAFLCQACDSSVHSANPLARRHHRVRLKIISRINSSNDLSSGMSNIRVPSWHKGFTKKPRTPRHRRHTNRGVKSPFNVVPEVCPQDTISNSHEESTDMLLYRVPATPSSEQGVSMTDERKVYLLGSESAIEIAEFSADVESLLGKGLESEFVGMEELGLVGAKEVEEHASWESCVDNENVSLTYEEAKEKVVLLDKNQQVLKKKILLLQLDYEAVISAWTSQKSPWTTADKPDLGTQQFCSHSMVTCGVEFYHPPGEWGELSGCHSTMADDGREARVLRYREKRRKRLFSKKVRYEVRKMNAEKRPRMKGRFVKRSCIQTPDTVPLLKIK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04048 364 SMART bboxneu5 14 61 IPR000315 GO:0008270
Vimu7g04048 364 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 350 - -
Vimu7g04048 364 Coils Coil 218 238 - -
Vimu7g04048 364 ProSiteProfiles CCT domain profile. 307 349 IPR010402 GO:0005515
Vimu7g04048 364 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Vimu7g04048 364 Pfam CCT motif 307 349 IPR010402 GO:0005515
Vimu7g04048 364 MobiDBLite consensus disorder prediction 87 105 - -
Vimu7g04048 364 MobiDBLite consensus disorder prediction 84 110 - -
Vimu7g04048 364 CDD Bbox1_BBX-like 18 61 - -
Vimu7g04048 364 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04048 Vimu-Chr7 38417606 38419050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04048 5 349 C2C2-CO-like Transcription Factor Family AT1G25440 42.157 2.46e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu7g04048 CCT 1.3e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04048 7 38417606 38419050 Vimu7g04048 7 38417606 38419050 ECH