Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04047 ATGAAGATTAGTTGTAATGGGTGTCGCATTCTTCGCAAAGGTTGTACTGAGGACTGTGTGATTAGGCCATGTCTTGAATGGATAAACTCCTCGGAGGCACAAGCTAATGCCACCCTTTTCCTTTCTAAGTTCTATGGTCGTGCCGGCTTGCTCAACCTCATCAATGCTGCCCCACAACAACATCGGACTGATGTTTTCAAATCACTAATGTATGAAGCCTGTGGGAGAATCATAAACCCAACATTTGGATCAGTTGGCTTATTTTGGAGTGGTGAGTGGGCCCAATGCCAAGCTGCTGTTGATGCTGTGCTAGCTGGGTCCCAGATCAATGTGATGCCAACATCTCATTCACAAAGCGACCATGGTTCGAAACTCCTTGACATACGTCATGTGTCCAAAGATGCCAACATGGACAAGGTGAAAGGAAAATCTACGAAGCACAAGGATGTTATGATGCCAATGTCACATGAGGGTTTAGTCAACTCAGCTACATTATGGAAGCCAATTTTAAGTCATGAGCCAAGACGGTTAGAGGGTGGTAATGGGGAAATAATGAAGGCTGTGTTGGTGAGCCAAGACAAGCCAAGAATAAATGGTGGAGCCGATATTGATTTAGAGCTAACTCTTGGCTAG 633 0.4502 MKISCNGCRILRKGCTEDCVIRPCLEWINSSEAQANATLFLSKFYGRAGLLNLINAAPQQHRTDVFKSLMYEACGRIINPTFGSVGLFWSGEWAQCQAAVDAVLAGSQINVMPTSHSQSDHGSKLLDIRHVSKDANMDKVKGKSTKHKDVMMPMSHEGLVNSATLWKPILSHEPRRLEGGNGEIMKAVLVSQDKPRINGGADIDLELTLG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04047 210 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vimu7g04047 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 147 - -
Vimu7g04047 210 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04047 Vimu-Chr7 38404132 38405028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04047 1 209 AS2 family AT3G02550 45.815 9.61e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu7g04047 LOB 1.8e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04047 7 38404132 38405028 Vimu7g04047 7 38404132 38405028 ECH