Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03830 ATGTCTGAGGCTGCTAAAGACTCAGCCATAAAGCTGTTTGGTAGAACAATTTCTCTGCCACGCCACAACGAGGTTTCTGCTCTTGGTTCTTCTTCTGAACCTGCTCCTCCTCAAGATTATTCTCACCATCACAGTCCTCCTTCATCTTCATCTTTTCCACGTGAAGTGACCTCCACAACGAACCATGAACCTGAGAGTGACAAGGAAACATCAAGGAAAGAACTCACCTCAACACAAGATGACGAAATCTTACATGAAGAACTGAAATCTCCAACATCCTCATGCAATCTCGAGAACCCCAAGACCCCCTCAACGGAAATAGAAACTTCCTTAACGAAATCACCTAAAAAGGGAGACCAAAGCGACACGACAAGCGCATCAGAGGACAAAACTCCAAAGAAACCAGACAAGATCCTTCCATGCCCTCGTTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTGAATCAGCCACGCCACTTCTGCAAGCACTGCCAGAGATACTGGACTGCAGGGGGAACCATGAGGAATGTGCCAGTTGGTGCAGGTCGCCGCAAGAACAAAAACTCCTCTTCTGCTGCATCACATTATCGTCAAATCATGGTTCCTGAAACCCTTCAGAACGGATCATTGCACAGTGCTGTGTTGACCTTTGGATCAGATTTTCCTCTCTGTGACTCCATGGCTTCTGTGTTGAGCCTTGCTGAGAAAACACAAAAAGGTGTCCTCAACGGCTTTCATTCACCTAAGCATAATGCTAGCACTGTTAATAATAACAATACTGGTGATGATATTAAGTCAGTTGGTGCTTCTGTTATGGCTTCATCTTTGTGTGAGAAGAGAGAAAATGCTAATAGTTCTCATGAAGAATCAGTGGATAAGATTTATCATCAAGGTTTCAGTCCTCAATTGTGCCTCACAGGTTCTTCTTCATCATCTTCTTCTCCTTGGCCTTATCAATGGAACCCTGCAATGACTCCTTCTGCTTTTTACCAACCTGTGTCCTTCTACCCCACACCAGCATTCTGGAGATGCATGCCACCACCATCTTGGAGTGTAAATTACCAATCTGCCCCTTGCTCTGGTCCAAACTCACCAACCTTGGGGAAACATTCAAGAGAAGGGGAGATCTTGTTCCAAAAGCCTGGCACTGAAAGCAGCAGCAACATGGCAGAAAATAGCAACACTGTGTTGATCCCCAAGACGCTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCTATATGGTCAACACTAGGGATCGAGAACGAGAAGGGAAACTCTCTCAATGGAGGAGGCCTTTTCAAGGCATTTGCATCAAAGGGAGGCAGTGATGACAAGAAGAACCATGTGGTGGTTGAAGCATCGCCAGTGTTGCAAGCCAACCCTGCAGCTTTGTCAAGGTCTCTTGTATTCCATGAGAGAACATAG 1446 0.4571 MSEAAKDSAIKLFGRTISLPRHNEVSALGSSSEPAPPQDYSHHHSPPSSSSFPREVTSTTNHEPESDKETSRKELTSTQDDEILHEELKSPTSSCNLENPKTPSTEIETSLTKSPKKGDQSDTTSASEDKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSSSAASHYRQIMVPETLQNGSLHSAVLTFGSDFPLCDSMASVLSLAEKTQKGVLNGFHSPKHNASTVNNNNTGDDIKSVGASVMASSLCEKRENANSSHEESVDKIYHQGFSPQLCLTGSSSSSSSPWPYQWNPAMTPSAFYQPVSFYPTPAFWRCMPPPSWSVNYQSAPCSGPNSPTLGKHSREGEILFQKPGTESSSNMAENSNTVLIPKTLRIDDPTEAAKSSIWSTLGIENEKGNSLNGGGLFKAFASKGGSDDKKNHVVVEASPVLQANPAALSRSLVFHERT 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03830 481 MobiDBLite consensus disorder prediction 89 121 - -
Vimu7g03830 481 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Vimu7g03830 481 MobiDBLite consensus disorder prediction 122 137 - -
Vimu7g03830 481 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Vimu7g03830 481 MobiDBLite consensus disorder prediction 60 88 - -
Vimu7g03830 481 MobiDBLite consensus disorder prediction 23 59 - -
Vimu7g03830 481 PANTHER CYCLIC DOF FACTOR 2 1 481 IPR045174 GO:0003700|GO:0006355
Vimu7g03830 481 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Vimu7g03830 481 MobiDBLite consensus disorder prediction 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03830 Vimu-Chr7 34629759 34632805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03830 1 480 C2C2-Dof Transcription Factor Family AT3G47500 41.153 7.47e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu7g03830 zf-Dof 4.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03830 - - gmx:100775201 674.855