Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03577 ATGTCACCCGATGACACACCACCTTCAAAGCCCGCCACAGCAACAACAACAACAACGGACCAAGAGACCCAAAGTTCAGGTGGCAGAAAAGGCTCCTCCACTAGGCCCCAAGAGCAAGGCCTCAAGTGTCCACGATGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAGCCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCTTTGCGTAACGTCCCTATTGGCGGTGGATGCAGGAAGAACAAGAAGGTTAGGTCATCGAGGCTTTCATGTGACTCCAAGGACTCTGGTTCCTCCTCTTCAGACCTTGGTGGCCTCAAGTTCCTTCATACTCTTCCTCCTTCCATGGACTTTCACCTTGGAGGGTTACCCTTCCCTAGGCTTCACCATCACCCTCCAGCAACTTATAACCAATTTTCCTCTTTTGGGGACACTTCTAGTGCTTCTTCCTGTTTCAACCTTGACCCTTCTCCTGGCACCACCTCAAGTTCTTTCGCTGCACTTAATTACCCTTTTTCTTACAATGGTGCAATCCAAGGCATGAGCGCTATGAATGTTCACAGTGGTCACGCCTCTTCCATTGAGTCTTTAAGTTCTATAAACCAGGACTTGCACTGGAAGTTGCAGCAGCAGCGATTGGCAATGCTGTTTGGTGGAGATAACAGCCAGAAAGATCATAGTGGTAGTGGAGGGATGTCACCGACGATTAACCACCTCGAGAACCAGACACAGAAACCACAAGCCATTTTGTTTCAAAATCTTGAGGTTTCAAAGGCAGGGATTTTCCCCGTTGAGAACTCTAGAAAAGAAAATGGTCCATGTGGGGACACACACACACCCTCCACTGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGACTCCTCCTACAGCTACTACTACCAGTAGTGGTGGCCCAGGGAATGATAATGCAAGCAATTGGAGTAGCGGTGTGAATGCTTGGGGTGATGTGCCGCAGCAATATACTGCTTTGCCCTAG 1035 0.4889 MSPDDTPPSKPATATTTTTDQETQSSGGRKGSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVRSSRLSCDSKDSGSSSSDLGGLKFLHTLPPSMDFHLGGLPFPRLHHHPPATYNQFSSFGDTSSASSCFNLDPSPGTTSSSFAALNYPFSYNGAIQGMSAMNVHSGHASSIESLSSINQDLHWKLQQQRLAMLFGGDNSQKDHSGSGGMSPTINHLENQTQKPQAILFQNLEVSKAGIFPVENSRKENGPCGDTHTPSTEWFFGNSYASVTPPTATTTSSGGPGNDNASNWSSGVNAWGDVPQQYTALP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03577 344 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Vimu7g03577 344 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Vimu7g03577 344 MobiDBLite consensus disorder prediction 7 39 - -
Vimu7g03577 344 MobiDBLite consensus disorder prediction 1 43 - -
Vimu7g03577 344 MobiDBLite consensus disorder prediction 307 344 - -
Vimu7g03577 344 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Vimu7g03577 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 226 IPR045174 GO:0003700|GO:0006355
Vimu7g03577 344 MobiDBLite consensus disorder prediction 307 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03577 Vimu-Chr7 30495373 30497322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03577 32 344 C2C2-Dof Transcription Factor Family AT5G65590 39.252 4.35e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu7g03577 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03577 - - gmx:100780729 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03577 7 30495373 30497322 Vimu7g03577 7 30495373 30497322 PCT