Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03030 ATGGCTTTGGTTGTTGTGGCTGAAAAGGAAGGAGAAGTTAGGCAGAGGCTAGGAAGGAAGAAAGAAACAAGAAACATGGGAAGGATGTGGGTCCCATGTCAGATAATTAATTGGTGGTGGGAGAGTCCAACTATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGACGAGGCTGCACTTTGTCACGCCTGCGATGAGAAGCTTCATAGATATGCTTCGATCCGATTTGATCTTGTTGCGGTGTTGTGTGAATTGAAAATCCGAGTTCACATGTGCAACAAGCTAGCAAGTAGACATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGCTGAAAATCCAGGTTCACAGCCATTGGAACCTGGTGAGAGTAAAAGAGGACAAAATCAACTTCCCAAACTAAAAATGGGAGAGAAGCAGCACAATCATGTGATGCCTCTGCTTCCAACACCAGGATCTGATGCTGATGGGCATACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAATAGATTACATGAACAAGCATCAAATAATCAGGTTAGAGTGCATGGGAAGTAG 768 0.4388 MALVVVAEKEGEVRQRLGRKKETRNMGRMWVPCQIINWWWESPTMRTLCDACESAAAIVFCAADEAALCHACDEKLHRYASIRFDLVAVLCELKIRVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPGSQPLEPGESKRGQNQLPKLKMGEKQHNHVMPLLPTPGSDADGHTKMETKMIDLNMKPNNRLHEQASNNQVRVHGK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03030 255 PANTHER B-BOX ZINC FINGER PROTEIN 22 45 205 - -
Vimu7g03030 255 ProSiteProfiles Zinc finger B-box type profile. 116 161 IPR000315 GO:0008270
Vimu7g03030 255 CDD Bbox1_BBX-like 121 161 - -
Vimu7g03030 255 ProSiteProfiles Zinc finger B-box type profile. 44 89 IPR000315 GO:0008270
Vimu7g03030 255 SUPERFAMILY B-box zinc-binding domain 113 151 - -
Vimu7g03030 255 MobiDBLite consensus disorder prediction 170 194 - -
Vimu7g03030 255 SMART bboxneu5 116 161 IPR000315 GO:0008270
Vimu7g03030 255 SMART bboxneu5 44 82 IPR000315 GO:0008270
Vimu7g03030 255 Pfam B-box zinc finger 47 78 IPR000315 GO:0008270
Vimu7g03030 255 Pfam B-box zinc finger 117 155 IPR000315 GO:0008270
Vimu7g03030 255 CDD Bbox1_BBX-like 48 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03030 Vimu-Chr7 25543693 25545553 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vimu7g03030 zf-B_box 3.7e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03030 7 25543693 25545553 Vimu7g03030 7 25543693 25545553 ECH
Vimu10g03659 10 45736521 45737560 Vimu7g03030 7 25543693 25545553 ECH
Vimu5g02389 5 34597911 34598856 Vimu7g03030 7 25543693 25545553 ECH
Vimu7g03030 7 25543693 25545553 Vimu7g03030 7 25543693 25545553 PCT