Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03011 ATGGAAACCACCTCAGTTTCCAAAATACAGTTTGCATTGTTTTGTTTGGCGTTCTGGTTGGCTGTTCAGCTGGAGTGGGTTCACTGTAGTGTTACCTACGACAGAAAGGCCATTCTCATCAATGGCAAAAGGAGACTCCTTTTTTCTGGCTCTATACATTACCCAAGAAGTACCCCAGATATGTGGGAAGATCTGATTTACAAGGCCAAAGAAGGAGGTCTGGACGTCATTGAAACCTACGTCTTTTGGAATGTTCACGAGCCTTCTCCTGGCAATTTCGACTTTGAAGGAAGGAACGATCTCGTGAGGTTCGTGAAGACAATACAGAAAGCGGGGCTGTATGCTCATCTTCGCATTGGACCTTATGTTTGTGCAGAATGGAATTTCGGAGGGTTTCCTGTTTGGCTCAAGTATGTTCCGGGCATCAGTTTTAGAACAGACAATGAACCTTTCAAGAGGGCAATGCAAGGGTTCACTGAGAAGATTGTGGGAATGATGAAGAGTGAGAAACTCTATGAATCTCAGGGTGGCCCTATCATACTTTCTCAGATTGAGAACGAGTATGGGGCACAGAGTAAATTACTTGGACCTCCTGGCCAACGTTACGTAAACTGGGCTGCAAAAATGGCTATTGAAACGGGAACGGGGGTCCCCTGGGTTATGTGCAAGGAAGATGATGCACCAGATCCCGTGATAAACACATGCAATGGCTTTTACTGTGATTATTTCACTCCTAATAAACCCTATAAGCCTTCAATGTGGACAGAGGCTTGGAGCGGCTGGTTTTCTGAATTTGGAGGTTCGATTCATGAAAGGCCTGTTCAGGATCTGGCATTTGCAGTTGCCCGATTCATACAGAAAGGAGGATCTTTTGTTAACTACTACATGTATCATGGGGGAACCAATTTTGGCCGTACAGCTGGAGGCCCTTTCATCACTACAAGTTATGATTATGATGCTCCACTGGATGAATATGGTTTGATTAGGCAACCCAAGTATGGTCATCTGAAAGAGCTTCATAAGGCTATCAAGATGTGTGAGCGGGCTTTAGTTTCAACTGACCCAGCTGTTACTTCATTGGGGAACTTTCAACAGGCTTATGTATACTCTGCAAAATCTGGAGATTGTGCTGCATTCCTCTCAAACTATGATACAAAATCTTCTGTTAGAGTTATGTTCAACAATATGCACTATAACTTACCTCCGTGGTCCATCAGCATCCTTCCTGATTGCAGAAATGCTGTTTTCAATACAGCAAAAGTTGGAGTGCAAACATCTCAGATGCAAATGCTGCCAACAAATACTCATATGTTCTCATGGGAGAGATTTGAGGAGGACGTTTCTTCTCTTGATGACAGCTCTGCAATTGCAATCACTACTTCTGGTCTCCTGGAACAGATAAATGTGACACGGGATACAAGTGATTATCTTTGGTATATAACTAGTGTTGATATAGATTCATCGGAATCTTTTCTCCGAGAAGGCAAACTACCCTCTCTCATTGTTCAATCCACGGGGCATGCTGTGCATGTTTTTATCAATGGTCAACTTTCAGGTTCTGCCTTTGGAACACGAGAGGATAGGAGATTCAGATATACTGGCGCAGTAAACCTCCGAGCTGGAACAAACAGAATAGCTCTGCTCAGTGTTGCTGTTGGACTTCCTAATGTAGGAGGACATTTTGAGACCTGGAGCACAGGAATACTTGGTCCTGTTGTACTCCGGGGACTTGACCAAGGAAAGTTGGATTTATCTTGGAAAAAGTGGACTTATCAGGTTGGGCTGAAAGGAGAGGCCATGAATCTTGCATCTCCAAATGGTATCACTTCTGTAGAGTGGATGCAGTCAGCATTAGTTTCGGACAGAAATCAACCACTGACCTGGCACAAGACTTATTTTGATGCTCCAAATGGAGACGAGCCGTTGGCACTGGACATGGAGAGTATGGGTAAAGGTCAAATTTGGATTAATGGACTGAGCATTGGAAGATACTGGACAGCTCCAGCTGCTGGTAATTGCAACGGTTGCAGCTATGCAGGCACCTTCAGACCTCCAAAGTGCCAGGTTGGTTGTGGCCAACCAACCCAGCGGTGGTACCATTTACCTCGATCTTGGTTGAAGCCAAATCATAATCTGCTAGTTGTTTTTGAGGAACTTGGGGGAGATCCTTCAAAGATTTCAATTGCAAAGAGATCAGTGAGCAGTGTCTGCGCTGATGTGTCTGAGTACCATCCAAATGTTAGGAATTGGCACATTGAGAGCTATGGGAAATCAGAAGAGTTCCATCCCCCCAAAGTTCACTTGCATTGCAGTCCTGGCCAAGCCATCTCTTCCATTAAATTTGCAAGCTTTGGAACTCCTTTGGGGACCTGTGGAAACTATGAGCAAGGAGTCTGTCATTCTCCCTCATCTTATTCCATCTTGGAGAAGAAATGTATAGGGAAGCCCAGATGCACGGTCACTGTATCAAACAGTAATTTTGGGCATGACCCTTGTCCAAATGTGTTGAAGAGGTTATCAGTTGAAGCTGTTTGCGCTCCAACCAAGTGGAGGGGATGA 2559 0.4459 METTSVSKIQFALFCLAFWLAVQLEWVHCSVTYDRKAILINGKRRLLFSGSIHYPRSTPDMWEDLIYKAKEGGLDVIETYVFWNVHEPSPGNFDFEGRNDLVRFVKTIQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGMMKSEKLYESQGGPIILSQIENEYGAQSKLLGPPGQRYVNWAAKMAIETGTGVPWVMCKEDDAPDPVINTCNGFYCDYFTPNKPYKPSMWTEAWSGWFSEFGGSIHERPVQDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLIRQPKYGHLKELHKAIKMCERALVSTDPAVTSLGNFQQAYVYSAKSGDCAAFLSNYDTKSSVRVMFNNMHYNLPPWSISILPDCRNAVFNTAKVGVQTSQMQMLPTNTHMFSWERFEEDVSSLDDSSAIAITTSGLLEQINVTRDTSDYLWYITSVDIDSSESFLREGKLPSLIVQSTGHAVHVFINGQLSGSAFGTREDRRFRYTGAVNLRAGTNRIALLSVAVGLPNVGGHFETWSTGILGPVVLRGLDQGKLDLSWKKWTYQVGLKGEAMNLASPNGITSVEWMQSALVSDRNQPLTWHKTYFDAPNGDEPLALDMESMGKGQIWINGLSIGRYWTAPAAGNCNGCSYAGTFRPPKCQVGCGQPTQRWYHLPRSWLKPNHNLLVVFEELGGDPSKISIAKRSVSSVCADVSEYHPNVRNWHIESYGKSEEFHPPKVHLHCSPGQAISSIKFASFGTPLGTCGNYEQGVCHSPSSYSILEKKCIGKPRCTVTVSNSNFGHDPCPNVLKRLSVEAVCAPTKWRG 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03011 852 FunFam Beta-galactosidase 26 346 - -
Vimu7g03011 852 Gene3D - 758 851 IPR043159 -
Vimu7g03011 852 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 PRINTS Glycosyl hydrolase family 35 signature 624 638 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 PRINTS Glycosyl hydrolase family 35 signature 651 667 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 FunFam Beta-galactosidase 295 423 - -
Vimu7g03011 852 FunFam Beta-galactosidase 757 849 - -
Vimu7g03011 852 Gene3D - 598 738 - -
Vimu7g03011 852 Pfam Beta-sandwich domain in beta galactosidase 350 421 IPR041392 -
Vimu7g03011 852 Gene3D - 433 575 - -
Vimu7g03011 852 SUPERFAMILY (Trans)glycosidases 30 347 IPR017853 -
Vimu7g03011 852 SUPERFAMILY Galactose-binding domain-like 405 578 IPR008979 -
Vimu7g03011 852 ProSiteProfiles SUEL-type lectin domain profile. 764 846 IPR000922 GO:0030246
Vimu7g03011 852 FunFam Beta-galactosidase 596 737 - -
Vimu7g03011 852 CDD Gal_Rha_Lectin_BGal 756 845 - -
Vimu7g03011 852 PANTHER BETA-GALACTOSIDASE RELATED 22 747 IPR001944 GO:0004553|GO:0005975
Vimu7g03011 852 FunFam Beta-galactosidase 451 588 - -
Vimu7g03011 852 SUPERFAMILY Galactose-binding domain-like 587 753 IPR008979 -
Vimu7g03011 852 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Vimu7g03011 852 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Vimu7g03011 852 Gene3D Glycosidases 27 347 - -
Vimu7g03011 852 Pfam Galactose binding lectin domain 768 845 IPR000922 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03011 Vimu-Chr7 25371494 25376534 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03436 10 44177138 44181862 Vimu7g03011 7 25371494 25376534 ECH
Vimu1g03160 1 43821507 43827017 Vimu7g03011 7 25371494 25376534 ECH
Vimu7g03011 7 25371494 25376534 Vimu7g03011 7 25371494 25376534 ECH