Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03005 ATGGCGGGTTTATTCTCACTAGGAGGTAGAGGGAACAACAACAACGAAGAGGAAATTCCTCCCCCTCCTGATACCCTATACTGGTATAACAACAAGAATGATGATGTTTCTTCTTATCACCGAGGAGGTGGCTTTGAGCTATGGAACCAACAGCAGTTACAGCAACAACAACAACACTTTATGGGTCAAGCTCCTCCACAACCACGACCTCTCTTTCACCAAGATCTATACTCCGCCTTGGGTGTTGGACCCAGCAGACCCTTATCCGACGATCAGTCATCGTCAAGATCCAGCTTCATGGTGGGAGGAAGCGGGAGTGGAAGCGGTGGAATTAGCTGTCAGGACTGTGGGAACCAAGCTAAAAAGGATTGCCCTCACATGCGGTGCAGAACATGCTGCAAGAGCCGGGGCTTCGATTGCCAGACCCATGTCAAGAGCACATGGGTTCCCGCTTCACGCCGCCGTGAGAGACAGCAACAACTCTCTGTGTTGCAACAAAACATGGAAACTTCTGGAGACCTTCCCAGAAGGCAGAGAGAAAGAGATCATAATAACCCCACCTCCTCTTCTCCTCTTGCTTGCACTCGCTTGCCTTCCAATCCCTCCTCTTCAGGGTTAGAGGAGGTCAATTTCCCGGCGGTGGTGAGATCTTCTGCGGAGTTCAGGTGCGTACGTGTTAGCTCGATAGATGAGGCGGAAGAGGAGTATGCATACTCAACGGCTGTGAACATAGGAGGGCATGTGTTCAAAGGGATTTTATATGACTATGGTCCAGAAGGTAACAGTAACTTCTTGGGTGGTGCTGGGGAAAGCTCGTCCACTGGTGTTGGAGGTTTGAACCTCACTACTGGTGCCGTTGTCTCAGAGCCACTCCTTGATCCTTCTTCTTCCTTGTATCCAGCTCCTCTTAACACCTTCATGCCTGGTAGTGGTACGCAATTCTTCCCTCACCCACGATCTTGA 963 0.5047 MAGLFSLGGRGNNNNEEEIPPPPDTLYWYNNKNDDVSSYHRGGGFELWNQQQLQQQQQHFMGQAPPQPRPLFHQDLYSALGVGPSRPLSDDQSSSRSSFMVGGSGSGSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSVLQQNMETSGDLPRRQRERDHNNPTSSSPLACTRLPSNPSSSGLEEVNFPAVVRSSAEFRCVRVSSIDEAEEEYAYSTAVNIGGHVFKGILYDYGPEGNSNFLGGAGESSSTGVGGLNLTTGAVVSEPLLDPSSSLYPAPLNTFMPGSGTQFFPHPRS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03005 320 MobiDBLite consensus disorder prediction 80 104 - -
Vimu7g03005 320 MobiDBLite consensus disorder prediction 1 26 - -
Vimu7g03005 320 NCBIfam putative zinc finger domain, LRP1 type 112 154 IPR006510 -
Vimu7g03005 320 NCBIfam LRP1 C-terminal domain 211 258 IPR006511 -
Vimu7g03005 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 304 IPR007818 GO:0003700|GO:0006355
Vimu7g03005 320 MobiDBLite consensus disorder prediction 150 172 - -
Vimu7g03005 320 MobiDBLite consensus disorder prediction 87 104 - -
Vimu7g03005 320 MobiDBLite consensus disorder prediction 185 206 - -
Vimu7g03005 320 MobiDBLite consensus disorder prediction 150 206 - -
Vimu7g03005 320 Pfam Domain of unknown function (DUF702) 110 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03005 Vimu-Chr7 25329978 25331628 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vimu7g03005 DUF702 2.7e-64 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03447 10 44276968 44278494 Vimu7g03005 7 25329978 25331628 ECH
Vimu7g03005 7 25329978 25331628 Vimu7g03005 7 25329978 25331628 ECH
Vimu10g03658 10 45716785 45717944 Vimu7g03005 7 25329978 25331628 ECH