Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02901 ATGCTAGGGTATTGTGGTGGTGATCCATCTCAGTTGCAGTGGTTGCTGAAGATGCCCGTGAGTGGCTTGGGTGGTTGTCCAGCTCATGATATCACCAATGAAATCGCCAATGAAATTCCAGTTCATCTTCAAAGACTGCAATATGTTGCTTTTGCTTCATTGTTAGGCAAGTTATCCCATCTTTTCTTCCATTGCAATATGTTGGAGTTGCTCTTTGATCTTGATATACTGACTGAATGTACCGGAAAAAAGGCATCTGTCTCATCCATTCCTCAAATTAGTCTGCTTATCACTTTCTCTGTTGACTTCTTCTTGGCTTGGGAGAAGATAAGTGATAATTCTTCTGACCCTTTGGTGCTTGATGTGGGTCACAATCTTGTGGTGCCACTTCCATGCACATGCTTCAATCGTAGACATAATTATTTGCCTTCAATTTACCTCTCCTATGTGGTAAATCCAATGGATACTTTGGCTGCCATTGCAGCTAGGTATTTCACTACACTTACTGATTTGATGAATGTTAATGACATGGGGAGTGCAGCTATCTCTGATAGAGATATTCTTGTTCTTTCACAGAAGTTGGTGTCAACAATTGACGAACTACACAGAAAGTTTGCTCCATCTGAACCATTCATTGACTTAGTTTCTCATGTTCCCTTATCTCCAATGCTTCACCTAGGATTCTGTATCTCAGCTGCAGTTGCTCTTTCCATGGACATGTGCATAATTACTATACCACTTGAATTTCAATTTGGATATGCTGCTTTCAACTTGAAAGCAGCATATCGAGATTTGAGTTCAAGTGCCATCAAATCTGCACTCATGACAACAGCTTATACCCACGACAACACAGAGTCTCCGCTTGGTGATGCAACGGGAGAAGAAGCCCTCTCCACAACCTGGGCTGGTTTATGA 915 0.4175 MLGYCGGDPSQLQWLLKMPVSGLGGCPAHDITNEIANEIPVHLQRLQYVAFASLLGKLSHLFFHCNMLELLFDLDILTECTGKKASVSSIPQISLLITFSVDFFLAWEKISDNSSDPLVLDVGHNLVVPLPCTCFNRRHNYLPSIYLSYVVNPMDTLAAIAARYFTTLTDLMNVNDMGSAAISDRDILVLSQKLVSTIDELHRKFAPSEPFIDLVSHVPLSPMLHLGFCISAAVALSMDMCIITIPLEFQFGYAAFNLKAAYRDLSSSAIKSALMTTAYTHDNTESPLGDATGEEALSTTWAGL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02901 304 Pfam LysM domain 149 181 IPR018392 -
Vimu7g02901 304 Gene3D LysM domain 136 198 IPR036779 -
Vimu7g02901 304 SUPERFAMILY LysM domain 147 190 IPR036779 -
Vimu7g02901 304 CDD LysM 148 195 IPR018392 -
Vimu7g02901 304 ProSiteProfiles LysM domain profile. 147 196 IPR018392 -
Vimu7g02901 304 SMART LysM_2 148 197 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02901 Vimu-Chr7 24451669 24454799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02901 104 190 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 55.056 2.44e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02901 - - pvu:PHAVU_008G163700g 126.716