Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02852 ATGATCCAAGAACTCTTGGGTGCTGCTACTGCTAGCCTTATAGCAGGAGAAACAAAAATCTCCATTAATAATAATGGAGGAGGAGGACGACTTCTACTAACACCACCCGCACCGTCTTCTCCTTCTCCGTCTCCTTCTTGCACAACAACTCCTCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACCAAAGGTGGTGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAGCAAGACCTCCGGCATGTCCAACTCGGTGGGAAAGCAGGCCGCCACAAAGATGAAAGCAGTGGCATCGGAGCTTGGAAGGCCACAGGGACTCTTTGACCAAGAGCTTCCGCAAACCCCAATCCTTTGGGGCTCACCGCAAAATACTCAACTCATGGCTTTACTAAGAGCTACCCAAAGCCAAAACCAAAACCAAAACCAAAACTCAAACCCTAACCCTAACCCTAGTCTTGTGTCAATTGCTGTCAAGGTCACTGAGTCATTTCTCCCAAATGGATTGCTGAATAGTACTAGAACTGGTCTAGGATACGATGGTGTGGGAGAACTTCCTTCACTGGGTCTATGCAGCTCCTTTTGGAGGAATAATCAAAATCAGAATCAGCAGCAAAGCAACGGTTTTGTGCTTGGAGAACAGCAAAGTAATGGAGTTCAAGAACTTTACCACAAGTTCATGTCATCATCGTCAGTTCATTATTGTGGTAGTGATAATTCACCGGTGTTTCTCGGCAACATGCCTTCATCCTCTTCTTTGTCCAACATTTTGGAATCATCTTCAGTTTCTGGCAGCGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGGGTGATCTTCCCACAACAAGTGGAGCATATCCTTAA 873 0.4742 MIQELLGAATASLIAGETKISINNNGGGGRLLLTPPAPSSPSPSPSCTTTPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKTSGMSNSVGKQAATKMKAVASELGRPQGLFDQELPQTPILWGSPQNTQLMALLRATQSQNQNQNQNSNPNPNPSLVSIAVKVTESFLPNGLLNSTRTGLGYDGVGELPSLGLCSSFWRNNQNQNQQQSNGFVLGEQQSNGVQELYHKFMSSSSVHYCGSDNSPVFLGNMPSSSSLSNILESSSVSGSEFGCWNPTLSWGDLPTTSGAYP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02852 290 MobiDBLite consensus disorder prediction 31 50 - -
Vimu7g02852 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 49 223 IPR045174 GO:0003700|GO:0006355
Vimu7g02852 290 Pfam Dof domain, zinc finger 49 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02852 Vimu-Chr7 24116394 24117422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02852 51 88 C2C2-Dof Transcription Factor Family AT5G65590 81.579 3.62e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu7g02852 zf-Dof 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02852 - - gmx:778100 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02852 7 24116394 24117422 Vimu7g02852 7 24116394 24117422 ECH
Vimu7g02852 7 24116394 24117422 Vimu7g02852 7 24116394 24117422 PCT