Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02786 ATGCCTCAGCCACCCTCACCCTCCTTCCTCCTCTGTCATGAACAATACTCCTCTTTCCAACAACATTCTCCAACTCTCATAACCACCCCATCTTCACCTTCCATTTTTTCCGACCACCACCTCTTCTCCCAACACGACCACCTTCTCTCTCTACTCTCCAAAGAGGCCGCAACGCATTTCACTCCCTCCCCTTCCCACCACGTCGTACGCTGGATTTCTACACTTTCCCATTTCCACGGTTTCGCTCCTCTCACCACCGTTCTCGCCGTTAACTACTTCAACAGGTTCGTTAACAGAAGGAGCTTTCAGACCGAAGATAAACCATGGAAGATTCAACTGGCAGCCGTTGCTTGTGTCTCTCTCGCAGCAAAAGTGGAGGAAACACGGGTGCCGCTTCTTTTGGAGTTGCAAGTGGAGGAATCGGAATTTGTGTTTGAAGCGAAGACCATACATACGATGGAACTCCTAGTGTTGTCCACTCTCGAATGGAAAATGAACCCTGTCACTCCAATCTGTTTCTTTCAACACTTTCTCACAAGGCTTGCTTTAAAGCGTCACTTGCACTGGGAATTTATGTGTGGGTGCCAACATGTTCTTCTCTCTGTCATTGCCGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTGTCTGCTGCTATAATGATACACGTTATTGAAGAGATCGAACCATTGAATGCTACGGAGTACCGAAATCAACTTCTTGGTTTACTCAAAAGTAACGAGGAGCAAGTGAATGAGTGCTACAAACTGATGCTGGGATTATTAGTTTGCTGTAAAGGGATTCACAATCCTGGTCAGAGGCGCAAACGTGTCTCTGAGCCAAGTAGCCCTGATGGGGTCATTGATGCATCTTTCTTCTGTGAAAGCTCAAATGATTCGTGGTCAGTGGCATCACTTTCTGTGGAGCCAGAGTTAAAGAGGAGAAAAGATGAGGACCAGCAGATTCGTTTGCCCCCAGTGAATCGAGTGTCTGTTGATGTTCTAAATATTCCTCGTTAA 1020 0.4637 MPQPPSPSFLLCHEQYSSFQQHSPTLITTPSSPSIFSDHHLFSQHDHLLSLLSKEAATHFTPSPSHHVVRWISTLSHFHGFAPLTTVLAVNYFNRFVNRRSFQTEDKPWKIQLAAVACVSLAAKVEETRVPLLLELQVEESEFVFEAKTIHTMELLVLSTLEWKMNPVTPICFFQHFLTRLALKRHLHWEFMCGCQHVLLSVIADSRVMSYLPSTLSAAIMIHVIEEIEPLNATEYRNQLLGLLKSNEEQVNECYKLMLGLLVCCKGIHNPGQRRKRVSEPSSPDGVIDASFFCESSNDSWSVASLSVEPELKRRKDEDQQIRLPPVNRVSVDVLNIPR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02786 339 Gene3D - 167 256 - -
Vimu7g02786 339 FunFam CYCLIN D32 167 256 - -
Vimu7g02786 339 SMART Cyclin_C_2 168 296 IPR004367 -
Vimu7g02786 339 FunFam D6-type cyclin 46 166 - -
Vimu7g02786 339 Pfam Cyclin, C-terminal domain 168 274 IPR004367 -
Vimu7g02786 339 SUPERFAMILY Cyclin-like 150 263 IPR036915 -
Vimu7g02786 339 CDD CYCLIN_AtCycD-like_rpt2 168 258 - -
Vimu7g02786 339 Gene3D - 57 166 - -
Vimu7g02786 339 Pfam Cyclin, N-terminal domain 60 166 IPR006671 -
Vimu7g02786 339 SUPERFAMILY Cyclin-like 46 166 IPR036915 -
Vimu7g02786 339 PANTHER CYCLINS 62 270 IPR039361 -
Vimu7g02786 339 SMART cyclin_7 70 159 IPR013763 -
Vimu7g02786 339 CDD CYCLIN_AtCycD-like_rpt1 69 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02786 Vimu-Chr7 23432760 23434069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02786 46 329 Core Cell Cycle Gene Families AT5G67260 47.855 2.10e-86 264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02786 7 23432760 23434069 Vimu7g02786 7 23432760 23434069 ECH
Vimu10g03272 10 42975476 42976967 Vimu7g02786 7 23432760 23434069 ECH
Vimu1g02956 1 41940139 41941687 Vimu7g02786 7 23432760 23434069 ECH
Vimu7g02786 7 23432760 23434069 Vimu3g03432 3 47387701 47389574 PCT
Vimu7g02786 7 23432760 23434069 Vimu7g02786 7 23432760 23434069 PCT