Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00973 ATGGCAAGTTATCAAACCAATGTAGATTCAAGTTTTGAACAGGGCAAAATGACAGATTCAAGGCAAGGTACAGCATCGATGGGTTCTTCGTCGCGAAGCCTTCCTGATTTCAAGAAATCTATTAAGCTGAAGTATGTGAAGCTTGGTTATCATTACCTGATAACTCATGGAATGTACCTTTGCCTTACTCCCCTTGTGTTGCTGATTGCTGCTCAGCTCTCAACCTTCTCCTTGCAAGATTTTTATGATATTTGGGAGCATCTGCAATACAACCTGATATCTGTTGTTCTCTGTTCGACTCTTCTTGTTTTCCTATCAACCCTTTACTTCCTCACTCGTCCTCGGCCAGTGTACCTTGTCAATTTCTCTTGTTACAAGCCCGAAGAGTCTCGGCAGTGCCCAAAGAGGAAATTCATAGACCATTCCCGTTTGACCGGTTCTTTCACTGAGGAAAATCTTGAATTCCAGAGGAAGATCCTTGAGAGATCTGGCCTTGGGGAGACCACTTACCTTCCTGAAGCTGTCCTCAACATTCCTCCCAACCCTTCAATGGAAGAAGCTAGGAAAGAAGCTGCGGCTGTTATGTTTGGTGCCATTGATGAGCTATTAGCCAAAACCTCTGTAAAGCCTAAGGACATTGGGATTCTGATTGTAAACTGTAGTCTCTTCAACCCTACTCCATCACTTTCGGCAATGGTTGTCAATCATTACAAGCTTCGGGGGAATATAAGGAGCTACAACCTTGGTGGAATGGGTTGCAGCGCAGGGCTGATCTCAATTGATCTTGCCAAAGATCTTCTCCAGGCCAATCCCAACTCCTATGCATTGGTCATCAGCATGGAGAATATCACATTGAATTGGTATTTTGGAAACGATCGATCGAAGCTTGTTTCCAATTGTTTATTTCGTATGGGAGGAGCTGCAGTTCTGCTCTCCAACAAAAGCTCGGACAGAAGAAGATCCAAATACAGATTGATCACCACGGTTCGCACTCATAAGGGTGCTGATGACAAGTGCTTTAGCTGTGTAACACATGAAGAAGATGCCAATGGCAAGGTTGGTGTTACTTTGTCAAAAGATCTGATGGCTGTTGCTGGTGATGCTTTAAAAACCAATATCACTACACTGGGACCTCTCGTACTTCCGACATCAGAACAGCTTCTATTCTTTGCAACGTTAGTCGGGAAGAAAATTTTCAAGATGAAGATCAAGCCTTATATTCCAGATTTCAAGCTAGCTTTTGAACATTTTTGCATCCATGCCGGTGGTAGAGCAGTTTTGGATGAACTGGAGAAAAACTTGCAGCTGTCTCCTTGGCATATGGAGCCATCAAGAATGACCCTCTATCGTTTCGGAAACACATCCAGCAGTTCACTTTGGTATGAGCTGGCTTACACTGAAGCCAAAGGAAGGATCAGAAAAGGAGACAGAACATGGCAAATCGCATTTGGTTCTGGATTCAAGTGTAACAGTGCAGTGTGGAAGGCTCTCAGGACCATCGACTCTGCTAAGGAAAAGAGTCCTTGGATTGATGAGATCGATCAGTTTCCAGTAGATGTTCCTAGAGTGTCTTCATTTTAA 1581 0.4377 MASYQTNVDSSFEQGKMTDSRQGTASMGSSSRSLPDFKKSIKLKYVKLGYHYLITHGMYLCLTPLVLLIAAQLSTFSLQDFYDIWEHLQYNLISVVLCSTLLVFLSTLYFLTRPRPVYLVNFSCYKPEESRQCPKRKFIDHSRLTGSFTEENLEFQRKILERSGLGETTYLPEAVLNIPPNPSMEEARKEAAAVMFGAIDELLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVVNHYKLRGNIRSYNLGGMGCSAGLISIDLAKDLLQANPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAVLLSNKSSDRRRSKYRLITTVRTHKGADDKCFSCVTHEEDANGKVGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFATLVGKKIFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWKALRTIDSAKEKSPWIDEIDQFPVDVPRVSSF 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00973 526 SUPERFAMILY Thiolase-like 302 498 IPR016039 GO:0016746
Vimu7g00973 526 MobiDBLite consensus disorder prediction 1 33 - -
Vimu7g00973 526 FunFam 3-ketoacyl-CoA synthase 127 496 - -
Vimu7g00973 526 SUPERFAMILY Thiolase-like 103 321 IPR016039 GO:0016746
Vimu7g00973 526 Pfam FAE1/Type III polyketide synthase-like protein 109 397 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vimu7g00973 526 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 415 495 IPR013747 -
Vimu7g00973 526 CDD CHS_like 102 494 - -
Vimu7g00973 526 PIRSF Very_long_ch_3-ktacl-CoA_syn 36 526 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu7g00973 526 Gene3D - 129 496 IPR016039 GO:0016746
Vimu7g00973 526 PANTHER 3-KETOACYL-COA SYNTHASE 87 519 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00973 Vimu-Chr7 9505667 9507247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00973 19 525 Miscellaneous Gene Families AT2G26640 82.643 0.0 899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00973 7 9505667 9507247 Vimu7g00973 7 9505667 9507247 ECH
Vimu7g00973 7 9505667 9507247 Vimu10g00854 10 7573552 7575084 PCT