Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00945 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTACTCTCGTACCCTAGCCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACCAATTCTTCAAAACACCAATCCAATTCCAATTACGCCCTTCCTCCTCCTCTTCCTCCTCCTTTGTCCTTTCTTCAATCCTTTGACGAAAATATCTTTCTCGAACACCACCATGACTTTCTCTTACTTCACCCCTCTCTAGCCGACCCCGGACTCTCAAGAAACCTTCACGTTGCTCCCGAAATCCCCGCAATTCCCTCCTCTGGACAACCTGCCACTGCCCCTATGGACCAACCTACAAGGAAGAGGTCCACCAAGAGAGATCGCCACAGCAAAATCAACACCGCACGAGGCCTCAGAGACCGAAGAATGAGGCTGTCCCTCGAAGTTGCAAAGAGATTCTTCGGCTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTCGAGTGGCTACTAAACCAAGCAAAAGTCGAAATCAAACAACTTGCTAGGGAAAAAAACAGTGTTGGTGGTGCCAAGAGTGCATCATCAACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTGGTCAGTGGAGTTAACGAGGAGCACGAGAGGGAGACACCCAACATGAAGAGAAAAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATACCATCGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCGAGAGAAAGAACAAGAGAGAAGATGAGGACTCGGAGAGTACTTGCTGCAGATGCTTCAAACCTTAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGCTACTCAGAGCCAAAGCGTGAACCACCCCTCCTTGGATGCCCACCTTCCTGATACCGAAGAACCAAGTTCTCACGCAAAGGAACATTTGGGAACCGTGGAGGACATAGCGCGCCATGAAGACAATTCTTTGGTGATCATGAACAAGTGGAGCCCAACCATGATATTCAATTCTCTAAACAACTCGGCAATCCTTCACGAACATCAATTTGCAGAATTTCAGTCCTTGGGAAAACCTTGGGAAACCTACAACGATCACATCTAG 1119 0.4763 MYSSNTSLNGNDLLSYPSQPFCFRPFSFESNPTNSSKHQSNSNYALPPPLPPPLSFLQSFDENIFLEHHHDFLLLHPSLADPGLSRNLHVAPEIPAIPSSGQPATAPMDQPTRKRSTKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKVEIKQLAREKNSVGGAKSASSTSECEGVSSLDEVVVSGVNEEHERETPNMKRKTSKVCRKSAFNTIDKESREKARERARERTREKMRTRRVLAADASNLNRLSSWNPFETVEDSAATQSQSVNHPSLDAHLPDTEEPSSHAKEHLGTVEDIARHEDNSLVIMNKWSPTMIFNSLNNSAILHEHQFAEFQSLGKPWETYNDHI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00945 372 MobiDBLite consensus disorder prediction 232 258 - -
Vimu7g00945 372 MobiDBLite consensus disorder prediction 281 309 - -
Vimu7g00945 372 MobiDBLite consensus disorder prediction 94 127 - -
Vimu7g00945 372 Pfam TCP family transcription factor 117 258 IPR017887 -
Vimu7g00945 372 MobiDBLite consensus disorder prediction 209 258 - -
Vimu7g00945 372 MobiDBLite consensus disorder prediction 281 297 - -
Vimu7g00945 372 ProSiteProfiles R domain profile. 238 255 IPR017888 -
Vimu7g00945 372 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 104 369 IPR005333 GO:0003700
Vimu7g00945 372 ProSiteProfiles TCP domain profile. 118 176 IPR017887 -
Vimu7g00945 372 MobiDBLite consensus disorder prediction 209 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00945 Vimu-Chr7 9170572 9172025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00945 1 252 TCP Transcription Factor Family AT3G18550 33.119 3.30e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu7g00945 TCP 3.8e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01141 6 11780787 11781993 Vimu7g00945 7 9170572 9172025 ECH
Vimu10g00834 10 7430417 7432008 Vimu7g00945 7 9170572 9172025 ECH
Vimu7g00945 7 9170572 9172025 Vimu7g00945 7 9170572 9172025 ECH