Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00889 ATGCAGCAAATACACTCCATGGCACCGGGAACAGCGGGAGGAGGAGGAGGAGGAGGAGGAGCAAGGTTTTTCCCCGGCACCGCCGCCTCGGACAGGAGGCTCCGACCCCACCACCAGAACCACCAGGCCCTCAAGTGCCCCCGCTGTGACTCCCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAAAACTGCCGCCGCTACTGGACCAAGGGTGGCGTCCTCCGCAACGTCCCCGTCGGCGGCGGGTGCCGTAAATCCAAACGCTCCAACAAACCCGCCAAAACCTCCGACGCCGCCCCCCCGCCCCCGCTGCCCGACCCGGACCATTCCAGCAGCGAGAGCTCGAGCCTGACCGCCGCTGCCGCGGAGCCCGTATCGGCGCCGGTAAACTCCGATTCCACGAACATGCAAGAGTCGAAGTTGTCGGTCCCCGTGGATCCTGTTTTGGAAACGAATCCTCTGGAGCAGGGAGCAGGGGACTGCGGTGGTATCTTCTCAGAGATTGGACCTTTCACCAGCCTGATCGCTACTTCCACTAACGAGCCCTTGGGTTTCGGTTTCGGCAACGGTCTGCCCGATGCGTCGTCGTTTCAGTGGCAGCACTCGAAGGTGAGCAGCAACCAGGAATTGAAGTTGGCCGAAAGCTCCTTCCTCGATCACACCGTTGATTTGTCGACACTGCATGGTAAAACCAACCACGGAACATTCGGATCGTTGGATTGGCAGGGCGGTGCGGATCAAGGTTTGTTTGATCTCCCTAACACCGTTGATCACGCTTACTGGAGTCACACTCACTGGTCTGACCACGACAATTCTTCTCTCTTCCATCTCCCCTGA 867 0.5905 MQQIHSMAPGTAGGGGGGGGARFFPGTAASDRRLRPHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPAKTSDAAPPPPLPDPDHSSSESSSLTAAAAEPVSAPVNSDSTNMQESKLSVPVDPVLETNPLEQGAGDCGGIFSEIGPFTSLIATSTNEPLGFGFGNGLPDASSFQWQHSKVSSNQELKLAESSFLDHTVDLSTLHGKTNHGTFGSLDWQGGADQGLFDLPNTVDHAYWSHTHWSDHDNSSLFHLP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00889 288 MobiDBLite consensus disorder prediction 89 152 - -
Vimu7g00889 288 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Vimu7g00889 288 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Vimu7g00889 288 MobiDBLite consensus disorder prediction 1 27 - -
Vimu7g00889 288 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Vimu7g00889 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 210 IPR045174 GO:0003700|GO:0006355
Vimu7g00889 288 MobiDBLite consensus disorder prediction 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00889 Vimu-Chr7 8685992 8686858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00889 31 285 C2C2-Dof Transcription Factor Family AT5G60850 44.561 2.71e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu7g00889 zf-Dof 2.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00889 - - gmx:778097 416.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00889 7 8685992 8686858 Vimu10g00789 10 6951885 6952847 PCT