Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00803 ATGCACGAAATTAGAGATCCTGCAATTAGGCTCTTCGGCCAGAAGATCCCCTTCCCTGAAGATGTTGACATAGAAGAAGAAGAAGAGGAGGAAGAAGAAGACGAGAGTGCTGACGGAAAAGAGGAAGAAGATAAAGAAGAGCAGGATGCTGGAGTTGAAAATGTTACTGAGGAAGAGCTAGAAGCTGATCCTTCTCCTAGTGCAGGAGAGACTAAAGATTCAGGTACATCCCCTGAGGCTATTGTGAACCCCAAAACACCCTCCATAGAAGAAGAAACGGCAAAATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCGGCTAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTACAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCGGGTGGCACCATGCGGAATGTTCCTGTGGGGGCAGGGCGGCGAAAGAACAAGAACTCTGCCTCGCATTATCGCCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCTCCCAATGGAACTCATCTTCCAACTTTGAAAGGCAATGGTAGAGTTCTCAGCTTTGGATTAGATGGACATGCACCGATTTGTGATTCCATGGCATCTGTCCTCAATCTTGGAGAGAAAAAGGTTCCCGATGGCACAAAAAATGGATTTCAGCATGGCTTTGAGGATCAAAGACTCCCTATTCCTCGCAAAAGTGGGGAAAATGGTGATGACTCTTCGACTACATCTTCCATTACAGTTTCCAATTCCATGGGAGAAAGTAGCAAAAACACCTTCCAACCACAACCGGTGCTCCAACATCATGGTTTCCTTCCTCAACTTCCGTGTGTTCCTTGGCCCTATACATGGAATTCTCCCGTTCCCCCACCTGCTTTGTGTCCTTCCGGATATGCCTTATCATTCTATCCTCCTGCTACATTCTGGAACTGTGGAATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTTTCATCTGCTTCAAACCCGAACTCTCCAGGCTCCGCTCCAAACTCTCCGACTCTGGGGAAGCACTCGCGGGACGGAGACATGATCAAGCAAGACTCCTTGCACAAAGAAGAAGCTTCAAAGCCAAGAAACGGGGGTGTTTTGGTTCCGAAAACGTTGAGAATCGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCAGTAAGTGGGGGAGGTATGTTTAAGGCCTTCCAATCAAAGAAGGAGGAAAAGAATCATGTTGAAGCCTCTCCAGTGTTGATGGCCAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCATGA 1419 0.4616 MHEIRDPAIRLFGQKIPFPEDVDIEEEEEEEEEDESADGKEEEDKEEQDAGVENVTEEELEADPSPSAGETKDSGTSPEAIVNPKTPSIEEETAKSKADKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHISISEALQAARIDSPNGTHLPTLKGNGRVLSFGLDGHAPICDSMASVLNLGEKKVPDGTKNGFQHGFEDQRLPIPRKSGENGDDSSTTSSITVSNSMGESSKNTFQPQPVLQHHGFLPQLPCVPWPYTWNSPVPPPALCPSGYALSFYPPATFWNCGMPGNWNVPWFSSLSSASNPNSPGSAPNSPTLGKHSRDGDMIKQDSLHKEEASKPRNGGVLVPKTLRIDDPNEAAKSSIWATLGIKNESVSGGGMFKAFQSKKEEKNHVEASPVLMANPAALSRSLNFHENS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00803 472 ProSiteProfiles Zinc finger Dof-type profile. 123 177 IPR003851 GO:0003677|GO:0006355
Vimu7g00803 472 ProSitePatterns Zinc finger Dof-type signature. 125 161 IPR003851 GO:0003677|GO:0006355
Vimu7g00803 472 Pfam Dof domain, zinc finger 120 177 IPR003851 GO:0003677|GO:0006355
Vimu7g00803 472 MobiDBLite consensus disorder prediction 69 83 - -
Vimu7g00803 472 MobiDBLite consensus disorder prediction 90 121 - -
Vimu7g00803 472 MobiDBLite consensus disorder prediction 21 64 - -
Vimu7g00803 472 MobiDBLite consensus disorder prediction 356 372 - -
Vimu7g00803 472 PANTHER CYCLIC DOF FACTOR 2 4 472 IPR045174 GO:0003700|GO:0006355
Vimu7g00803 472 MobiDBLite consensus disorder prediction 356 379 - -
Vimu7g00803 472 MobiDBLite consensus disorder prediction 243 291 - -
Vimu7g00803 472 MobiDBLite consensus disorder prediction 1 121 - -
Vimu7g00803 472 Coils Coil 22 42 - -
Vimu7g00803 472 MobiDBLite consensus disorder prediction 264 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00803 Vimu-Chr7 7975990 7978720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00803 1 470 C2C2-Dof Transcription Factor Family AT3G47500 48.776 6.54e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu7g00803 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00803 - - gmx:778113 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00803 7 7975990 7978720 Vimu10g01055 10 9846925 9849436 ECH
Vimu7g00803 7 7975990 7978720 Vimu7g00803 7 7975990 7978720 ECH
Vimu11g02348 11 40843547 40846238 Vimu7g00803 7 7975990 7978720 ECH