Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00667 ATGGGTTTTTCCTCTCTCCATGTCTGCATGAATTCATCAGATCAATGGCTGCAGGGCACAATTCACGAGGAATGTGGGGTGGATTCTTCTTCACCATCTGCCGACATGCTTCCATGCTCGAGACCGATGACAGAGAGGAGGCTAAGACCCTCACAAGAGCAAGCCCTGAAGTGCCCTAGGTGTGAATCAACACACACCAAGTTCTGCTACTACAACAACTACAGTCTCTCTCAGCCCAGGTATTTCTGCAAGACATGTAGAAGGTACTGGACCAAAGGAGGCACTCTCAGGAACATTCCTGTTGGAGGTGGTTGCAGAAAGAACAAGAAAGTTTCAACTAAGAAACACAATGACAACCAACCAGCTATTAGTCAAAACCAAACACAACCTGCAGGACCTTCTTATATTCATAATCACAAAGATCTTCAACATTCCTTCTTGGATGTGCAGTTTTCCCACCTCAACAATATACTTGGGACTAATGCTGGGGTACTCGGAAACCCTAACTTCATGGATAGTAAGTATAGCATGGGAATGCTGGAGAACCCTGGGCATATTGACTTCATGGAAAGCGGGTTGGATGGTATGAATATGATTAGGGGTTCAACTAGGAGTTTAGATATTCTTGAAAATAGTGATATGAGTGTGGGTGGTGGTGGTGTTGGGCTTGGTGATATGAGTGGCTACAATGGATTGCCATTGAATTATCAAGGTCTTTCTAGTGCAGCATTTGGGGGCATGTCCCTTGATGGAGGCATTAGCAATGTCGGAAGTTATATAATGGACTCTTGCCAGAGACTTATGTTGCCCTACGATGGAGGTCATAACATCCTTAACGGTTCAGTTGACGTGAAGCCAAACCCTAAGCTGTTGTCCCTTGAATGGCAAGATCAGGCTTGCTCTGAGGCTGAGAAAGTGTCATTGGGATATCTTAATGGTTCAGGATCATGGAGTGGCTATGGATCTTCCACAACAAACCCTTTGGTCTAG 990 0.4515 MGFSSLHVCMNSSDQWLQGTIHEECGVDSSSPSADMLPCSRPMTERRLRPSQEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNDNQPAISQNQTQPAGPSYIHNHKDLQHSFLDVQFSHLNNILGTNAGVLGNPNFMDSKYSMGMLENPGHIDFMESGLDGMNMIRGSTRSLDILENSDMSVGGGGVGLGDMSGYNGLPLNYQGLSSAAFGGMSLDGGISNVGSYIMDSCQRLMLPYDGGHNILNGSVDVKPNPKLLSLEWQDQACSEAEKVSLGYLNGSGSWSGYGSSTTNPLV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00667 329 MobiDBLite consensus disorder prediction 107 131 - -
Vimu7g00667 329 MobiDBLite consensus disorder prediction 117 131 - -
Vimu7g00667 329 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Vimu7g00667 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 155 IPR045174 GO:0003700|GO:0006355
Vimu7g00667 329 Pfam Dof domain, zinc finger 54 110 IPR003851 GO:0003677|GO:0006355
Vimu7g00667 329 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00667 Vimu-Chr7 6673812 6675311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00667 1 300 C2C2-Dof Transcription Factor Family AT5G62940 41.691 7.01e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu7g00667 zf-Dof 2.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g00667 - - gmx:100815061 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00667 7 6673812 6675311 Vimu10g01235 10 12364253 12365651 PCT