Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00252 ATGGCCACTGTTGCAACTATAGGAATTGGAGTAGGAGTGACCAAGCTCCAACAACCCCAAATACAAAGGCACAACAAGTCCTTGTTTCTTGGGCAGAGGCTTAGGATTCGACCCTCTGGGGAGGCTCAATGCAGTTCAAGATTCAATTTTTCAAACCCAACAAGAGTGGTTAAGGTTTTTGCACTAGGGGGTGAATGGATTGACACAGTTCACAACCTTTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGGGATGTAATCTATAGGAGCACTCTTCCCAAGTCCAATGGCTTGACTCTTACTGTCCCTGGGGTGATTCTGGCTTTGGGGACTCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAGAGGTTGTTCCGTCCCAGTTACAAGAAGGATGATTTTCTTCTGGGGAAGAAGTTGGGGGAAGGATCATTTGGAGTGGTTTATAGAGTGTCACTGGCCAACAAACCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTCTATGGTTTTCTTGAGAGCTCTTCAAAGAAATCTGCTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGGTGCAGAGTAGAGAGTTTCCATATAATGTTGGTGAGGTTCAAGACTTGCCCAAGGGATTGGAAAGAGAAAATAGAATCATTCAGACAATCATGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAATATTATTTTCTCCGAAGAGTCTCGGACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTGGGCATAAACTACATTCCAAAGGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAATACATCATGAGCACACAAACTCCTTCAGCACCCTCAGTTCCAGTTGCAACTGCACTTTCCCCAGTCTTATGGCAGTTGAATTCGCCAGACAGATTCGACATCTATAGTGCTGGTTTAATCTTTCTACAAATGGCTTTCCCTGGTCTACGGACTGATAATAGCCTCATTCAATTCAACCGTCAATTAAAGAGGTGTGACTATGACATAGTTGCATGGAGAAAAACTGTAGAGCCTCGATGCGGCCCTGAACTAAGGAGGGGCTTTGAGCTGTTGGATTTGGATGGTGGAATAGGATGGGAACTTTTAAAATCAATGGTAAGGTACAAAGCAAGACAACGACTGAGTGCAAAAGCAGCATTAGCTCATCCTTACTTTGACAGAGAAGGCTTGTTGGCATTGTCTTTCATGCAAACACTGAGACTGCAGCTCTTGCGGGCAACTCAACAGGACTATGGAGAAGCTGCCAAGTGGATTACTAATCTAATGGCAAAATCAGGGACTCAGAAGGATGGTGGATTCACTGAAGCTCAGCTTCAGGAACTAAGAGAAATCGAACCGAAAATGAAGGCCAGTGCACCAAGGAATGCTCTAGCTTCAGCTCTTAAACTTCAGAGGAAAATTATAAGAACCTTAAATGAGAGTATGGATGAGCTCAACAGACGCAGGAAAAGCTTTTGGTGGAGCAGATGGATCCCAAGAGAAGAATGA 1728 0.4479 MATVATIGIGVGVTKLQQPQIQRHNKSLFLGQRLRIRPSGEAQCSSRFNFSNPTRVVKVFALGGEWIDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPSYKKDDFLLGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKSAEYWLIWRFEGDATLADLVQSREFPYNVGEVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSVPVATALSPVLWQLNSPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDIVAWRKTVEPRCGPELRRGFELLDLDGGIGWELLKSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQTLRLQLLRATQQDYGEAAKWITNLMAKSGTQKDGGFTEAQLQELREIEPKMKASAPRNALASALKLQRKIIRTLNESMDELNRRRKSFWWSRWIPREE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00252 575 ProSitePatterns Protein kinases ATP-binding region signature. 158 185 IPR017441 GO:0005524
Vimu7g00252 575 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 57 550 - -
Vimu7g00252 575 ProSiteProfiles Protein kinase domain profile. 152 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00252 575 SUPERFAMILY Protein kinase-like (PK-like) 148 470 IPR011009 -
Vimu7g00252 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Vimu7g00252 575 FunFam Serine/threonine-protein kinase STN7, chloroplastic 256 470 - -
Vimu7g00252 575 SMART serkin_6 152 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g00252 575 Gene3D Transferase(Phosphotransferase) domain 1 256 469 - -
Vimu7g00252 575 CDD STKc_SNT7_plant 156 465 - -
Vimu7g00252 575 Coils Coil 541 561 - -
Vimu7g00252 575 Gene3D Phosphorylase Kinase; domain 1 139 232 - -
Vimu7g00252 575 Pfam Protein kinase domain 155 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00252 Vimu-Chr7 3129999 3136728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00252 265 466 Core Cell Cycle Gene Families AT2G38620 30.986 2.24e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vimu7g00252 Pkinase 4.4e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00252 7 3129999 3136728 Vimu7g00252 7 3129999 3136728 ECH