Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g00247 ATGAAAAAGGAATTAGATGATCAAGGACAGTGTTCATCTCAACCAATCAACAACAGTAACAACAACAATATTCAAAGCTACCAAGAGCAGCTTCTCCTTCAACAACAGATGCATCAGCAGCAGCAGCAGCAACAAAATAGTGACAACATCTTCGGGGGTTCAAGAGGGTTAATGTTCCCTGAAGTTACTCCAATCATGCAACCGTGGTCCATGCCTCCGGTTCACTCATTCAACCCGGTTCCCGTTCACTACAACAATAACACCAACCCTGTCAGAGACCATCATGACCAAACGTTTATAGTCCCTCCCACACCTTCACCCTATGCGAGCTTCTTCAGCAGAAGGGTCCCTTCTCTTCAATTTGCATACGAGAGTCCTTCTTCTGATCACCACCATCTAAGGATCATATCTGACACCCTCGGACCTATGGTTCAACCCGGTTCAGCACCCTTTGGACTCCAAGCCGAGTTGGGAAAAATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCAGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGGAGTTTATTGCCAAACACTACCAAAACAGATAAAGCTTCGCTGCTAGCAGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGCGAAACCTCTCTGATAGCAGAAAGCAGTGCAGTGCCAACCGAGGCAGACGAGTTGACAGTAGATGCAGCAGATGAAGATGGAAAGTTTGTGATCAAAGCCTCACTGTGCTGTGAAGATAGGTCAGATCTCTTACCCGACCTCATAAAAACGTTGAAGGCCTTGAAGCTCAGAACCCTCAAGGCTGAGATCACATCGCTTGGTGGGCGTGTGAAGAACGTGTTGGTCATTGCCGGTGACGAAGAAAGTTCAAACACCAATGGAGAACAAAGCATTCAGCAGCAACAACAATACTGTATTACCTCAATACAAGAAGCACTGAAGGCAGTGATGGAGAAGAGTGGTAGTGGAGATGAATCAGCTTCAGGGAATGTTAAGCGCCAAAGGACTAATAATATCAATTTTCTTGAACAAAGGTCTTTGTAA 1092 0.4579 MKKELDDQGQCSSQPINNSNNNNIQSYQEQLLLQQQMHQQQQQQQNSDNIFGGSRGLMFPEVTPIMQPWSMPPVHSFNPVPVHYNNNTNPVRDHHDQTFIVPPTPSPYASFFSRRVPSLQFAYESPSSDHHHLRIISDTLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRETSLIAESSAVPTEADELTVDAADEDGKFVIKASLCCEDRSDLLPDLIKTLKALKLRTLKAEITSLGGRVKNVLVIAGDEESSNTNGEQSIQQQQQYCITSIQEALKAVMEKSGSGDESASGNVKRQRTNNINFLEQRSL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g00247 363 FunFam transcription factor bHLH30 167 230 - -
Vimu7g00247 363 CDD ACT_UUR-ACR-like 257 333 - -
Vimu7g00247 363 Pfam Helix-loop-helix DNA-binding domain 175 221 IPR011598 GO:0046983
Vimu7g00247 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Vimu7g00247 363 MobiDBLite consensus disorder prediction 1 22 - -
Vimu7g00247 363 PANTHER TRANSCRIPTION FACTOR BHLH30 28 356 IPR045847 GO:0003700|GO:0006355
Vimu7g00247 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 227 IPR036638 GO:0046983
Vimu7g00247 363 Coils Coil 24 44 - -
Vimu7g00247 363 MobiDBLite consensus disorder prediction 34 52 - -
Vimu7g00247 363 CDD bHLH_AtAIG1_like 167 245 - -
Vimu7g00247 363 Gene3D - 167 228 IPR036638 GO:0046983
Vimu7g00247 363 SMART finulus 178 227 IPR011598 GO:0046983
Vimu7g00247 363 MobiDBLite consensus disorder prediction 8 22 - -
Vimu7g00247 363 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g00247 Vimu-Chr7 3059914 3062417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g00247 22 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.011 4.62e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g00247 HLH 2.5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00247 7 3059914 3062417 Vimu7g00247 7 3059914 3062417 ECH