LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g00206	ATGGAGGATTATAAGAACCGGCACCCTCAACAGCAGCAGCATCAACCAACCCATCTTCAGCAACAGCAGAATCGTAAAGAGGATTCTGAGAGGATGGAGAGGTACCCGAGGGATTTGCTTCAGGGATTTGCCATGAGAGGTGTTTCCATTAGGGATAATAATATGAATAACGTTAGCGTATCGCAGCCTCTTCATCACCCTCGTCCTGAGCAACAGGACCAGGAGGAGGATGAAGAGCTTGAGTTGAACCTTGGTCTTTCTCTCGGAGGAAAATTTGGGGTGGACAAGAACGCAAAAAAGAAGAAGCTTATGCGTTCTTCTTCTGTGGTGGGGACAATGCCTCTGTTCAGGGAGGACGACGCGGTGGCGCCGCCGCTTGCAGCGTTCCCTGCCCTAATGAGAACGTCTTCGCTGCCAACCGAGACGGAGGAGGAGTGGCGGCGGAGGAAGGAGATGCAGACTCTGCGCCGGATGGAGGCCAAGAGACGCCGGTCTGAGAAGCAGAAGGGATCCCGGGAGGCCGTTGCTGGTGGCTGCGCCGCCGCCGAGGAGGTGGAGGGTGGCAGTGTGGTGGCAATGGGGTTGACCAGATTTGGTTCTGCCACGTTGGCTCCACCCCCTCTAGGGTGGGGTGTGGCGGCGCCAAAGCAGGTTGTTCTTGGTGACGTGTTGGGGAAGGGAAAAGGTTTTCAAGGTCTGTTTGGGCAGCCATCTTCTCAGGGTTCGGCAGATTCGCAAGGAGGAAGCTCTTCATCAGTGTCCGAAATGGATAGCAAGGCTTTTTTAGGTGGTGGTGAAGCAAGCCCTGGAAGTAATCAATCAGCACAAGATGGTGTGGGTTTAGGGGCTAAGAGAAAAGAGAATGTGGCTAGAAGTTCGAAAGCAGAGGTGGAGAATCCATCTTCTAAGAAATCTGATCATTCCCAGAAGATAATGGGAAAGCAAATTGGGACAAACTCAATGGAAGACATGCCTTGTGTGTTTACAAAAGGGGATGGTCCAAATGGAAGAAGGATTGAGGGAATATTGTACAAATATGGTAAGGGAGAGGAAGTGAGGATCATGTGTGTGTGCCATGGGAACTTCCTGTCTCCAGCAGAGTTTGTTAAGCATGCTGGTGGTGGAGATGTTGCACACCCTCTTAGGCACATTGTTGTCAACCCTTCTGCTGCACCCTTTTAG	1182	0.5186	MEDYKNRHPQQQQHQPTHLQQQQNRKEDSERMERYPRDLLQGFAMRGVSIRDNNMNNVSVSQPLHHPRPEQQDQEEDEELELNLGLSLGGKFGVDKNAKKKKLMRSSSVVGTMPLFREDDAVAPPLAAFPALMRTSSLPTETEEEWRRRKEMQTLRRMEAKRRRSEKQKGSREAVAGGCAAAEEVEGGSVVAMGLTRFGSATLAPPPLGWGVAAPKQVVLGDVLGKGKGFQGLFGQPSSQGSADSQGGSSSSVSEMDSKAFLGGGEASPGSNQSAQDGVGLGAKRKENVARSSKAEVENPSSKKSDHSQKIMGKQIGTNSMEDMPCVFTKGDGPNGRRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHAGGGDVAHPLRHIVVNPSAAPF	393

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g00206	393	Pfam	Putative nuclear localisation signal	132	258	IPR032310	-
	Vimu7g00206	393	MobiDBLite	consensus disorder prediction	21	37	-	-
	Vimu7g00206	393	MobiDBLite	consensus disorder prediction	156	171	-	-
	Vimu7g00206	393	MobiDBLite	consensus disorder prediction	50	67	-	-
	Vimu7g00206	393	MobiDBLite	consensus disorder prediction	231	310	-	-
	Vimu7g00206	393	Coils	Coil	148	168	-	-
	Vimu7g00206	393	MobiDBLite	consensus disorder prediction	1	78	-	-
	Vimu7g00206	393	MobiDBLite	consensus disorder prediction	156	179	-	-
	Vimu7g00206	393	PANTHER	AFP HOMOLOG 2	35	390	IPR031307	GO:0007165
	Vimu7g00206	393	MobiDBLite	consensus disorder prediction	233	257	-	-
	Vimu7g00206	393	MobiDBLite	consensus disorder prediction	287	310	-	-
	Vimu7g00206	393	Pfam	Ethylene-responsive binding factor-associated repression	75	111	IPR012463	-
	Vimu7g00206	393	Pfam	Tify domain binding domain	352	386	IPR032308	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g00206	Vimu-Chr7	2557668	2560993	Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g00206	7	2557668	2560993	Vimu7g00206	7	2557668	2560993	ECH